Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23900

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23880 and PGA1_c23890 are separated by 187 nucleotidesPGA1_c23890 and PGA1_c23900 are separated by 262 nucleotidesPGA1_c23900 and PGA1_c23910 are separated by 192 nucleotides PGA1_c23880: PGA1_c23880 - nitrile hydratase subunit alpha, at 2,491,974 to 2,492,672 _c23880 PGA1_c23890: PGA1_c23890 - preprotein translocase secG-like protein, at 2,492,860 to 2,493,222 _c23890 PGA1_c23900: PGA1_c23900 - CTP synthase PyrG, at 2,493,485 to 2,495,128 _c23900 PGA1_c23910: PGA1_c23910 - fructose-bisphosphate aldolase class 1, at 2,495,321 to 2,496,223 _c23910 Position (kb) 2493 2494 2495 2496Strain fitness (log2 ratio) -2 -1 0 1at 2492.495 kb on - strand, within PGA1_c23880at 2492.495 kb on - strand, within PGA1_c23880at 2492.529 kb on - strand, within PGA1_c23880at 2492.539 kb on + strand, within PGA1_c23880at 2492.618 kb on - strandat 2492.618 kb on - strandat 2492.618 kb on - strandat 2492.625 kb on + strandat 2492.646 kb on + strandat 2492.654 kb on - strandat 2492.667 kb on - strandat 2492.681 kb on + strandat 2492.689 kb on - strandat 2492.693 kb on + strandat 2492.702 kb on - strandat 2492.720 kb on - strandat 2492.737 kb on + strandat 2492.737 kb on + strandat 2492.765 kb on - strandat 2492.765 kb on - strandat 2492.765 kb on - strandat 2492.905 kb on - strand, within PGA1_c23890at 2492.905 kb on - strand, within PGA1_c23890at 2493.272 kb on + strandat 2493.277 kb on + strandat 2495.314 kb on - strandat 2495.638 kb on + strand, within PGA1_c23910

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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2,492,495 - PGA1_c23880 0.75 +0.6
2,492,495 - PGA1_c23880 0.75 +0.3
2,492,529 - PGA1_c23880 0.79 -1.3
2,492,539 + PGA1_c23880 0.81 -0.2
2,492,618 - +0.3
2,492,618 - -1.6
2,492,618 - +0.2
2,492,625 + +0.2
2,492,646 + +0.5
2,492,654 - +0.4
2,492,667 - -0.0
2,492,681 + -0.2
2,492,689 - +1.0
2,492,693 + +1.0
2,492,702 - -2.1
2,492,720 - +0.3
2,492,737 + +0.6
2,492,737 + -0.3
2,492,765 - +1.2
2,492,765 - +0.5
2,492,765 - -1.5
2,492,905 - PGA1_c23890 0.12 -0.7
2,492,905 - PGA1_c23890 0.12 -2.6
2,493,272 + -0.4
2,493,277 + -0.5
2,495,314 - -2.1
2,495,638 + PGA1_c23910 0.35 -0.8

Or see this region's nucleotide sequence