Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01110

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01090 and PGA1_c01100 overlap by 17 nucleotidesPGA1_c01100 and PGA1_c01110 are separated by 112 nucleotidesPGA1_c01110 and PGA1_c01120 are separated by 146 nucleotidesPGA1_c01120 and PGA1_c01130 are separated by 58 nucleotides PGA1_c01090: PGA1_c01090 - DNA repair protein RecO, at 101,757 to 102,482 _c01090 PGA1_c01100: PGA1_c01100 - Heat shock protein, at 102,466 to 102,870 _c01100 PGA1_c01110: PGA1_c01110 - acyl-CoA dehydrogenase, at 102,983 to 104,668 _c01110 PGA1_c01120: PGA1_c01120 - sulfite exporter tauE/safE-like protein, at 104,815 to 105,603 _c01120 PGA1_c01130: PGA1_c01130 - putative cation efflux pump, at 105,662 to 106,561 _c01130 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2at 102.086 kb on + strand, within PGA1_c01090at 102.117 kb on + strand, within PGA1_c01090at 102.163 kb on + strand, within PGA1_c01090at 102.224 kb on - strand, within PGA1_c01090at 102.224 kb on - strand, within PGA1_c01090at 102.236 kb on - strand, within PGA1_c01090at 102.270 kb on + strand, within PGA1_c01090at 102.278 kb on - strand, within PGA1_c01090at 102.278 kb on - strand, within PGA1_c01090at 102.300 kb on + strand, within PGA1_c01090at 102.313 kb on - strand, within PGA1_c01090at 102.332 kb on - strand, within PGA1_c01090at 102.372 kb on + strand, within PGA1_c01090at 102.379 kb on + strand, within PGA1_c01090at 102.392 kb on - strand, within PGA1_c01090at 102.519 kb on + strand, within PGA1_c01100at 102.522 kb on - strand, within PGA1_c01100at 102.527 kb on + strand, within PGA1_c01100at 102.535 kb on - strand, within PGA1_c01100at 102.575 kb on - strand, within PGA1_c01100at 102.588 kb on + strand, within PGA1_c01100at 102.596 kb on - strand, within PGA1_c01100at 102.652 kb on - strand, within PGA1_c01100at 102.775 kb on + strand, within PGA1_c01100at 102.838 kb on - strandat 102.892 kb on - strandat 102.934 kb on + strandat 102.986 kb on + strandat 103.032 kb on + strandat 103.056 kb on + strandat 103.090 kb on + strandat 103.122 kb on + strandat 103.150 kb on - strandat 103.150 kb on - strandat 103.161 kb on + strand, within PGA1_c01110at 103.162 kb on + strand, within PGA1_c01110at 103.277 kb on + strand, within PGA1_c01110at 103.278 kb on - strand, within PGA1_c01110at 103.279 kb on - strand, within PGA1_c01110at 103.307 kb on + strand, within PGA1_c01110at 103.368 kb on - strand, within PGA1_c01110at 103.386 kb on + strand, within PGA1_c01110at 103.386 kb on + strand, within PGA1_c01110at 103.394 kb on - strand, within PGA1_c01110at 103.394 kb on - strand, within PGA1_c01110at 103.394 kb on - strand, within PGA1_c01110at 103.431 kb on - strand, within PGA1_c01110at 103.436 kb on + strand, within PGA1_c01110at 103.444 kb on - strand, within PGA1_c01110at 103.444 kb on - strand, within PGA1_c01110at 103.446 kb on + strand, within PGA1_c01110at 103.449 kb on - strand, within PGA1_c01110at 103.501 kb on + strand, within PGA1_c01110at 103.517 kb on + strand, within PGA1_c01110at 103.517 kb on + strand, within PGA1_c01110at 103.525 kb on - strand, within PGA1_c01110at 103.525 kb on - strand, within PGA1_c01110at 103.532 kb on - strand, within PGA1_c01110at 103.540 kb on + strand, within PGA1_c01110at 103.542 kb on + strand, within PGA1_c01110at 103.609 kb on + strand, within PGA1_c01110at 103.628 kb on + strand, within PGA1_c01110at 103.628 kb on + strand, within PGA1_c01110at 103.628 kb on + strand, within PGA1_c01110at 103.663 kb on + strand, within PGA1_c01110at 103.765 kb on - strand, within PGA1_c01110at 103.767 kb on + strand, within PGA1_c01110at 103.767 kb on + strand, within PGA1_c01110at 103.843 kb on + strand, within PGA1_c01110at 103.928 kb on - strand, within PGA1_c01110at 103.928 kb on - strand, within PGA1_c01110at 103.930 kb on + strand, within PGA1_c01110at 103.946 kb on + strand, within PGA1_c01110at 103.954 kb on - strand, within PGA1_c01110at 103.954 kb on - strand, within PGA1_c01110at 103.954 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.961 kb on - strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 103.963 kb on + strand, within PGA1_c01110at 104.052 kb on + strand, within PGA1_c01110at 104.053 kb on - strand, within PGA1_c01110at 104.080 kb on + strand, within PGA1_c01110at 104.151 kb on - strand, within PGA1_c01110at 104.151 kb on - strand, within PGA1_c01110at 104.174 kb on - strand, within PGA1_c01110at 104.174 kb on - strand, within PGA1_c01110at 104.174 kb on - strand, within PGA1_c01110at 104.195 kb on - strand, within PGA1_c01110at 104.223 kb on - strand, within PGA1_c01110at 104.240 kb on + strand, within PGA1_c01110at 104.245 kb on + strand, within PGA1_c01110at 104.314 kb on - strand, within PGA1_c01110at 104.334 kb on + strand, within PGA1_c01110at 104.342 kb on - strand, within PGA1_c01110at 104.409 kb on + strand, within PGA1_c01110at 104.409 kb on + strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.417 kb on - strand, within PGA1_c01110at 104.419 kb on + strand, within PGA1_c01110at 104.419 kb on - strand, within PGA1_c01110at 104.454 kb on - strand, within PGA1_c01110at 104.454 kb on - strand, within PGA1_c01110at 104.456 kb on - strand, within PGA1_c01110at 104.474 kb on - strand, within PGA1_c01110at 104.497 kb on - strand, within PGA1_c01110at 104.527 kb on + strandat 104.647 kb on + strandat 104.647 kb on + strandat 104.671 kb on + strandat 104.679 kb on + strandat 104.806 kb on + strandat 104.806 kb on + strandat 104.811 kb on + strandat 104.814 kb on - strandat 104.849 kb on + strandat 104.854 kb on + strandat 104.854 kb on + strandat 104.854 kb on + strandat 104.856 kb on + strandat 104.862 kb on - strandat 104.862 kb on - strandat 104.862 kb on - strandat 104.862 kb on - strandat 104.864 kb on + strandat 104.864 kb on + strandat 104.864 kb on + strandat 104.864 kb on - strandat 104.872 kb on - strandat 104.883 kb on - strandat 104.883 kb on - strandat 104.952 kb on - strand, within PGA1_c01120at 104.957 kb on + strand, within PGA1_c01120at 104.962 kb on + strand, within PGA1_c01120at 104.965 kb on - strand, within PGA1_c01120at 105.008 kb on - strand, within PGA1_c01120at 105.036 kb on - strand, within PGA1_c01120at 105.117 kb on + strand, within PGA1_c01120at 105.117 kb on + strand, within PGA1_c01120at 105.122 kb on + strand, within PGA1_c01120at 105.130 kb on - strand, within PGA1_c01120at 105.160 kb on - strand, within PGA1_c01120at 105.297 kb on + strand, within PGA1_c01120at 105.340 kb on - strand, within PGA1_c01120at 105.357 kb on + strand, within PGA1_c01120at 105.405 kb on - strand, within PGA1_c01120at 105.414 kb on + strand, within PGA1_c01120at 105.424 kb on + strand, within PGA1_c01120at 105.424 kb on + strand, within PGA1_c01120at 105.424 kb on + strand, within PGA1_c01120at 105.427 kb on - strand, within PGA1_c01120at 105.432 kb on - strand, within PGA1_c01120at 105.435 kb on + strand, within PGA1_c01120at 105.440 kb on + strand, within PGA1_c01120at 105.473 kb on - strand, within PGA1_c01120at 105.510 kb on + strand, within PGA1_c01120at 105.538 kb on - strandat 105.617 kb on + strandat 105.651 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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102,086 + PGA1_c01090 0.45 -0.7
102,117 + PGA1_c01090 0.50 +0.4
102,163 + PGA1_c01090 0.56 -0.8
102,224 - PGA1_c01090 0.64 +0.8
102,224 - PGA1_c01090 0.64 +0.8
102,236 - PGA1_c01090 0.66 -0.9
102,270 + PGA1_c01090 0.71 -0.6
102,278 - PGA1_c01090 0.72 +0.0
102,278 - PGA1_c01090 0.72 +0.6
102,300 + PGA1_c01090 0.75 +0.5
102,313 - PGA1_c01090 0.77 -0.6
102,332 - PGA1_c01090 0.79 +0.1
102,372 + PGA1_c01090 0.85 -0.3
102,379 + PGA1_c01090 0.86 -0.4
102,392 - PGA1_c01090 0.87 +0.6
102,519 + PGA1_c01100 0.13 +0.4
102,522 - PGA1_c01100 0.14 +0.2
102,527 + PGA1_c01100 0.15 +1.0
102,535 - PGA1_c01100 0.17 +1.0
102,575 - PGA1_c01100 0.27 +1.1
102,588 + PGA1_c01100 0.30 +0.1
102,596 - PGA1_c01100 0.32 -0.1
102,652 - PGA1_c01100 0.46 +1.1
102,775 + PGA1_c01100 0.76 +0.5
102,838 - +1.2
102,892 - +0.5
102,934 + +1.0
102,986 + -0.9
103,032 + -1.7
103,056 + +0.4
103,090 + -0.4
103,122 + +0.2
103,150 - -0.4
103,150 - +1.0
103,161 + PGA1_c01110 0.11 -1.0
103,162 + PGA1_c01110 0.11 -2.3
103,277 + PGA1_c01110 0.17 +2.6
103,278 - PGA1_c01110 0.17 -0.8
103,279 - PGA1_c01110 0.18 -0.4
103,307 + PGA1_c01110 0.19 -0.8
103,368 - PGA1_c01110 0.23 -0.1
103,386 + PGA1_c01110 0.24 -0.4
103,386 + PGA1_c01110 0.24 +0.5
103,394 - PGA1_c01110 0.24 -1.6
103,394 - PGA1_c01110 0.24 +1.1
103,394 - PGA1_c01110 0.24 +0.1
103,431 - PGA1_c01110 0.27 -0.6
103,436 + PGA1_c01110 0.27 -0.6
103,444 - PGA1_c01110 0.27 -2.1
103,444 - PGA1_c01110 0.27 +0.7
103,446 + PGA1_c01110 0.27 +0.2
103,449 - PGA1_c01110 0.28 -0.7
103,501 + PGA1_c01110 0.31 +0.5
103,517 + PGA1_c01110 0.32 -0.2
103,517 + PGA1_c01110 0.32 +1.1
103,525 - PGA1_c01110 0.32 +0.2
103,525 - PGA1_c01110 0.32 +1.1
103,532 - PGA1_c01110 0.33 -1.4
103,540 + PGA1_c01110 0.33 -0.1
103,542 + PGA1_c01110 0.33 -1.5
103,609 + PGA1_c01110 0.37 -0.3
103,628 + PGA1_c01110 0.38 -0.4
103,628 + PGA1_c01110 0.38 -0.3
103,628 + PGA1_c01110 0.38 -1.1
103,663 + PGA1_c01110 0.40 -2.7
103,765 - PGA1_c01110 0.46 -0.9
103,767 + PGA1_c01110 0.47 +0.2
103,767 + PGA1_c01110 0.47 -0.4
103,843 + PGA1_c01110 0.51 -0.4
103,928 - PGA1_c01110 0.56 +0.2
103,928 - PGA1_c01110 0.56 +1.2
103,930 + PGA1_c01110 0.56 +0.2
103,946 + PGA1_c01110 0.57 -0.3
103,954 - PGA1_c01110 0.58 +0.3
103,954 - PGA1_c01110 0.58 +0.6
103,954 - PGA1_c01110 0.58 -0.3
103,961 - PGA1_c01110 0.58 +0.4
103,961 - PGA1_c01110 0.58 -2.4
103,961 - PGA1_c01110 0.58 -1.2
103,961 - PGA1_c01110 0.58 +0.3
103,963 + PGA1_c01110 0.58 +0.2
103,963 + PGA1_c01110 0.58 +0.2
103,963 + PGA1_c01110 0.58 +0.7
103,963 + PGA1_c01110 0.58 +0.1
104,052 + PGA1_c01110 0.63 +0.8
104,053 - PGA1_c01110 0.63 +0.5
104,080 + PGA1_c01110 0.65 +0.2
104,151 - PGA1_c01110 0.69 +0.7
104,151 - PGA1_c01110 0.69 -0.2
104,174 - PGA1_c01110 0.71 -0.0
104,174 - PGA1_c01110 0.71 -0.2
104,174 - PGA1_c01110 0.71 +0.2
104,195 - PGA1_c01110 0.72 +0.8
104,223 - PGA1_c01110 0.74 +0.3
104,240 + PGA1_c01110 0.75 -0.4
104,245 + PGA1_c01110 0.75 -0.0
104,314 - PGA1_c01110 0.79 -2.6
104,334 + PGA1_c01110 0.80 +0.6
104,342 - PGA1_c01110 0.81 -0.8
104,409 + PGA1_c01110 0.85 -0.2
104,409 + PGA1_c01110 0.85 -0.5
104,417 - PGA1_c01110 0.85 +0.1
104,417 - PGA1_c01110 0.85 +0.5
104,417 - PGA1_c01110 0.85 +1.1
104,417 - PGA1_c01110 0.85 -0.4
104,417 - PGA1_c01110 0.85 -0.0
104,419 + PGA1_c01110 0.85 -0.1
104,419 - PGA1_c01110 0.85 -0.1
104,454 - PGA1_c01110 0.87 +1.4
104,454 - PGA1_c01110 0.87 +0.1
104,456 - PGA1_c01110 0.87 -0.2
104,474 - PGA1_c01110 0.88 -0.1
104,497 - PGA1_c01110 0.90 -0.3
104,527 + -0.3
104,647 + -0.8
104,647 + +0.6
104,671 + -0.1
104,679 + -0.9
104,806 + -0.3
104,806 + +0.6
104,811 + -0.4
104,814 - -1.0
104,849 + -1.7
104,854 + +0.9
104,854 + +1.3
104,854 + -1.5
104,856 + -0.9
104,862 - +0.8
104,862 - +0.4
104,862 - +0.4
104,862 - +0.4
104,864 + -1.2
104,864 + +1.0
104,864 + -0.4
104,864 - +0.4
104,872 - -2.1
104,883 - -0.4
104,883 - +0.5
104,952 - PGA1_c01120 0.17 +0.7
104,957 + PGA1_c01120 0.18 -0.4
104,962 + PGA1_c01120 0.19 -0.1
104,965 - PGA1_c01120 0.19 -0.4
105,008 - PGA1_c01120 0.24 -1.6
105,036 - PGA1_c01120 0.28 -0.8
105,117 + PGA1_c01120 0.38 -0.1
105,117 + PGA1_c01120 0.38 -0.9
105,122 + PGA1_c01120 0.39 +0.3
105,130 - PGA1_c01120 0.40 -0.9
105,160 - PGA1_c01120 0.44 -0.2
105,297 + PGA1_c01120 0.61 +0.1
105,340 - PGA1_c01120 0.67 +0.2
105,357 + PGA1_c01120 0.69 -1.1
105,405 - PGA1_c01120 0.75 -0.4
105,414 + PGA1_c01120 0.76 -0.4
105,424 + PGA1_c01120 0.77 +0.4
105,424 + PGA1_c01120 0.77 -0.3
105,424 + PGA1_c01120 0.77 -0.3
105,427 - PGA1_c01120 0.78 +0.7
105,432 - PGA1_c01120 0.78 -0.6
105,435 + PGA1_c01120 0.79 +0.2
105,440 + PGA1_c01120 0.79 -0.3
105,473 - PGA1_c01120 0.83 +1.0
105,510 + PGA1_c01120 0.88 +1.1
105,538 - -0.5
105,617 + +0.3
105,651 + -0.9

Or see this region's nucleotide sequence