Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19400 and BWI76_RS19405 are separated by 155 nucleotides BWI76_RS19405 and BWI76_RS19410 are separated by 169 nucleotides BWI76_RS19410 and BWI76_RS19415 are separated by 59 nucleotides
BWI76_RS19400: BWI76_RS19400 - NCS2 family permease, at 4,046,628 to 4,047,971
_RS19400
BWI76_RS19405: BWI76_RS19405 - LysR family transcriptional regulator, at 4,048,127 to 4,049,047
_RS19405
BWI76_RS19410: BWI76_RS19410 - hypothetical protein, at 4,049,217 to 4,049,534
_RS19410
BWI76_RS19415: BWI76_RS19415 - hypothetical protein, at 4,049,594 to 4,049,923
_RS19415
Position (kb)
4048
4049
4050 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4047.268 kb on + strand, within BWI76_RS19400 at 4047.306 kb on - strand, within BWI76_RS19400 at 4047.447 kb on + strand, within BWI76_RS19400 at 4047.681 kb on + strand, within BWI76_RS19400 at 4047.730 kb on + strand, within BWI76_RS19400 at 4047.755 kb on - strand, within BWI76_RS19400 at 4047.816 kb on - strand, within BWI76_RS19400 at 4047.862 kb on + strand at 4047.973 kb on - strand at 4048.109 kb on - strand at 4048.185 kb on + strand at 4048.361 kb on + strand, within BWI76_RS19405 at 4048.520 kb on + strand, within BWI76_RS19405 at 4048.842 kb on + strand, within BWI76_RS19405 at 4049.049 kb on + strand at 4049.113 kb on - strand at 4049.118 kb on + strand at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.250 kb on + strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.258 kb on - strand, within BWI76_RS19410 at 4049.261 kb on + strand, within BWI76_RS19410 at 4049.273 kb on - strand, within BWI76_RS19410 at 4049.289 kb on - strand, within BWI76_RS19410 at 4049.374 kb on - strand, within BWI76_RS19410 at 4049.411 kb on - strand, within BWI76_RS19410 at 4049.422 kb on + strand, within BWI76_RS19410 at 4049.447 kb on - strand, within BWI76_RS19410 at 4049.453 kb on - strand, within BWI76_RS19410 at 4049.460 kb on + strand at 4049.461 kb on + strand, within BWI76_RS19410 at 4049.466 kb on + strand, within BWI76_RS19410 at 4049.535 kb on + strand at 4049.553 kb on - strand at 4049.555 kb on + strand at 4049.558 kb on - strand at 4049.559 kb on - strand at 4049.594 kb on - strand at 4049.594 kb on - strand at 4049.594 kb on - strand at 4049.650 kb on - strand, within BWI76_RS19415 at 4049.650 kb on - strand, within BWI76_RS19415 at 4049.665 kb on + strand, within BWI76_RS19415 at 4049.673 kb on - strand, within BWI76_RS19415 at 4049.719 kb on - strand, within BWI76_RS19415 at 4049.729 kb on + strand, within BWI76_RS19415 at 4049.785 kb on - strand, within BWI76_RS19415 at 4049.787 kb on - strand, within BWI76_RS19415 at 4049.787 kb on - strand, within BWI76_RS19415 at 4049.813 kb on - strand, within BWI76_RS19415 at 4049.826 kb on - strand at 4049.827 kb on + strand, within BWI76_RS19415 at 4049.828 kb on + strand, within BWI76_RS19415 at 4049.835 kb on - strand, within BWI76_RS19415 at 4049.844 kb on - strand, within BWI76_RS19415 at 4049.844 kb on - strand, within BWI76_RS19415 at 4049.844 kb on - strand, within BWI76_RS19415 at 4049.857 kb on - strand, within BWI76_RS19415 at 4049.857 kb on - strand, within BWI76_RS19415 at 4049.895 kb on - strand at 4049.911 kb on - strand at 4049.938 kb on - strand at 4049.938 kb on - strand at 4049.938 kb on - strand at 4049.948 kb on - strand at 4049.948 kb on - strand at 4049.982 kb on + strand at 4049.985 kb on - strand at 4049.985 kb on - strand at 4049.990 kb on - strand at 4049.992 kb on - strand at 4049.993 kb on - strand at 4050.007 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 4,047,268 + BWI76_RS19400 0.48 +0.8 4,047,306 - BWI76_RS19400 0.50 -0.6 4,047,447 + BWI76_RS19400 0.61 +0.0 4,047,681 + BWI76_RS19400 0.78 -0.4 4,047,730 + BWI76_RS19400 0.82 -0.3 4,047,755 - BWI76_RS19400 0.84 -0.6 4,047,816 - BWI76_RS19400 0.88 -1.9 4,047,862 + -0.2 4,047,973 - -1.2 4,048,109 - +0.4 4,048,185 + -0.2 4,048,361 + BWI76_RS19405 0.25 +0.4 4,048,520 + BWI76_RS19405 0.43 -1.2 4,048,842 + BWI76_RS19405 0.78 -0.3 4,049,049 + -0.5 4,049,113 - -0.6 4,049,118 + +1.1 4,049,250 + BWI76_RS19410 0.10 +0.7 4,049,250 + BWI76_RS19410 0.10 -0.3 4,049,250 + BWI76_RS19410 0.10 -0.2 4,049,250 + BWI76_RS19410 0.10 +0.1 4,049,250 + BWI76_RS19410 0.10 +0.2 4,049,258 - BWI76_RS19410 0.13 -0.5 4,049,258 - BWI76_RS19410 0.13 -0.2 4,049,258 - BWI76_RS19410 0.13 -0.4 4,049,258 - BWI76_RS19410 0.13 -1.8 4,049,258 - BWI76_RS19410 0.13 +0.4 4,049,261 + BWI76_RS19410 0.14 -0.1 4,049,273 - BWI76_RS19410 0.18 +0.3 4,049,289 - BWI76_RS19410 0.23 -0.2 4,049,374 - BWI76_RS19410 0.49 -0.2 4,049,411 - BWI76_RS19410 0.61 -0.3 4,049,422 + BWI76_RS19410 0.64 -1.5 4,049,447 - BWI76_RS19410 0.72 -0.8 4,049,453 - BWI76_RS19410 0.74 -0.3 4,049,460 + +0.1 4,049,461 + BWI76_RS19410 0.77 -0.6 4,049,466 + BWI76_RS19410 0.78 +0.2 4,049,535 + +0.6 4,049,553 - +3.5 4,049,555 + -2.1 4,049,558 - -0.2 4,049,559 - -1.1 4,049,594 - +0.8 4,049,594 - -0.1 4,049,594 - -0.2 4,049,650 - BWI76_RS19415 0.17 -0.3 4,049,650 - BWI76_RS19415 0.17 -0.2 4,049,665 + BWI76_RS19415 0.22 +0.9 4,049,673 - BWI76_RS19415 0.24 -0.3 4,049,719 - BWI76_RS19415 0.38 +0.1 4,049,729 + BWI76_RS19415 0.41 -0.3 4,049,785 - BWI76_RS19415 0.58 -0.2 4,049,787 - BWI76_RS19415 0.58 -0.0 4,049,787 - BWI76_RS19415 0.58 -0.1 4,049,813 - BWI76_RS19415 0.66 +0.1 4,049,826 - +0.9 4,049,827 + BWI76_RS19415 0.71 +1.3 4,049,828 + BWI76_RS19415 0.71 +1.5 4,049,835 - BWI76_RS19415 0.73 -0.5 4,049,844 - BWI76_RS19415 0.76 +0.8 4,049,844 - BWI76_RS19415 0.76 +0.3 4,049,844 - BWI76_RS19415 0.76 -0.6 4,049,857 - BWI76_RS19415 0.80 -0.3 4,049,857 - BWI76_RS19415 0.80 +0.8 4,049,895 - -1.0 4,049,911 - -0.4 4,049,938 - -1.1 4,049,938 - -1.1 4,049,938 - -0.4 4,049,948 - -0.0 4,049,948 - +0.4 4,049,982 + +0.5 4,049,985 - +0.3 4,049,985 - +0.5 4,049,990 - +0.2 4,049,992 - +0.1 4,049,993 - +1.5 4,050,007 + +0.8
Or see this region's nucleotide sequence