Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08710

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08700 and BWI76_RS08705 are separated by 94 nucleotidesBWI76_RS08705 and BWI76_RS08710 are separated by 58 nucleotidesBWI76_RS08710 and BWI76_RS08715 are separated by 415 nucleotides BWI76_RS08700: BWI76_RS08700 - helix-turn-helix-type transcriptional regulator, at 1,833,019 to 1,833,750 _RS08700 BWI76_RS08705: BWI76_RS08705 - putative LuxR family regulatory protein, at 1,833,845 to 1,834,399 _RS08705 BWI76_RS08710: BWI76_RS08710 - hypothetical protein, at 1,834,458 to 1,834,676 _RS08710 BWI76_RS08715: BWI76_RS08715 - acyl-CoA thioesterase, at 1,835,092 to 1,836,375 _RS08715 Position (kb) 1834 1835Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1833.582 kb on + strand, within BWI76_RS08700at 1833.715 kb on + strandat 1833.716 kb on + strandat 1833.720 kb on + strandat 1833.728 kb on - strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.745 kb on + strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.753 kb on - strandat 1833.755 kb on + strandat 1833.768 kb on - strandat 1833.814 kb on - strandat 1833.824 kb on + strandat 1833.826 kb on - strandat 1833.832 kb on - strandat 1833.832 kb on - strandat 1833.867 kb on - strandat 1833.868 kb on - strandat 1834.093 kb on + strand, within BWI76_RS08705at 1834.093 kb on + strand, within BWI76_RS08705at 1834.093 kb on + strand, within BWI76_RS08705at 1834.098 kb on + strand, within BWI76_RS08705at 1834.175 kb on + strand, within BWI76_RS08705at 1834.209 kb on - strand, within BWI76_RS08705at 1834.223 kb on - strand, within BWI76_RS08705at 1834.223 kb on - strand, within BWI76_RS08705at 1834.253 kb on - strand, within BWI76_RS08705at 1834.319 kb on + strand, within BWI76_RS08705at 1834.327 kb on - strand, within BWI76_RS08705at 1834.405 kb on - strandat 1834.407 kb on - strandat 1834.468 kb on + strandat 1834.558 kb on - strand, within BWI76_RS08710at 1834.570 kb on + strandat 1834.572 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.579 kb on + strand, within BWI76_RS08710at 1834.580 kb on - strand, within BWI76_RS08710at 1834.585 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.587 kb on - strand, within BWI76_RS08710at 1834.591 kb on + strand, within BWI76_RS08710at 1834.591 kb on + strand, within BWI76_RS08710at 1834.591 kb on + strand, within BWI76_RS08710at 1834.593 kb on - strand, within BWI76_RS08710at 1834.597 kb on - strand, within BWI76_RS08710at 1834.597 kb on - strand, within BWI76_RS08710at 1834.599 kb on - strand, within BWI76_RS08710at 1834.599 kb on - strand, within BWI76_RS08710at 1834.599 kb on - strand, within BWI76_RS08710at 1834.604 kb on - strand, within BWI76_RS08710at 1834.678 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.729 kb on + strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.737 kb on - strandat 1834.742 kb on + strandat 1834.749 kb on + strandat 1834.749 kb on + strandat 1834.749 kb on + strandat 1834.749 kb on + strandat 1834.757 kb on - strandat 1834.757 kb on - strandat 1834.757 kb on - strandat 1834.757 kb on - strandat 1834.758 kb on - strandat 1834.760 kb on + strandat 1834.766 kb on + strandat 1834.870 kb on + strandat 1834.905 kb on + strandat 1835.010 kb on + strandat 1835.010 kb on + strandat 1835.017 kb on + strandat 1835.022 kb on + strandat 1835.041 kb on + strandat 1835.049 kb on - strandat 1835.076 kb on - strandat 1835.083 kb on - strandat 1835.259 kb on - strand, within BWI76_RS08715at 1835.260 kb on - strand, within BWI76_RS08715at 1835.401 kb on + strand, within BWI76_RS08715at 1835.414 kb on + strand, within BWI76_RS08715at 1835.416 kb on + strand, within BWI76_RS08715at 1835.445 kb on - strand, within BWI76_RS08715at 1835.496 kb on + strand, within BWI76_RS08715at 1835.504 kb on - strand, within BWI76_RS08715at 1835.554 kb on - strand, within BWI76_RS08715at 1835.564 kb on - strand, within BWI76_RS08715at 1835.564 kb on - strand, within BWI76_RS08715

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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1,833,582 + BWI76_RS08700 0.77 -0.4
1,833,715 + +0.5
1,833,716 + +0.8
1,833,720 + +0.2
1,833,728 - -0.9
1,833,745 + +0.0
1,833,745 + -0.1
1,833,745 + +0.1
1,833,745 + -2.0
1,833,745 + +0.0
1,833,745 + +0.2
1,833,745 + +0.8
1,833,745 + +0.1
1,833,745 + -0.3
1,833,745 + -0.4
1,833,745 + +2.0
1,833,753 - +0.4
1,833,753 - +1.5
1,833,753 - -0.6
1,833,753 - -1.7
1,833,753 - -1.0
1,833,753 - -0.2
1,833,755 + -1.1
1,833,768 - -1.0
1,833,814 - +0.1
1,833,824 + +0.6
1,833,826 - +2.7
1,833,832 - -0.7
1,833,832 - +1.1
1,833,867 - -0.8
1,833,868 - +0.0
1,834,093 + BWI76_RS08705 0.45 -0.0
1,834,093 + BWI76_RS08705 0.45 -1.2
1,834,093 + BWI76_RS08705 0.45 -1.0
1,834,098 + BWI76_RS08705 0.46 -1.5
1,834,175 + BWI76_RS08705 0.59 -0.6
1,834,209 - BWI76_RS08705 0.66 -0.6
1,834,223 - BWI76_RS08705 0.68 +1.0
1,834,223 - BWI76_RS08705 0.68 +3.0
1,834,253 - BWI76_RS08705 0.74 +0.1
1,834,319 + BWI76_RS08705 0.85 +0.4
1,834,327 - BWI76_RS08705 0.87 +0.3
1,834,405 - -1.4
1,834,407 - +0.4
1,834,468 + -1.8
1,834,558 - BWI76_RS08710 0.46 +0.9
1,834,570 + +0.6
1,834,572 + BWI76_RS08710 0.52 +1.3
1,834,579 + BWI76_RS08710 0.55 +0.8
1,834,579 + BWI76_RS08710 0.55 -2.4
1,834,579 + BWI76_RS08710 0.55 -0.0
1,834,579 + BWI76_RS08710 0.55 -0.4
1,834,579 + BWI76_RS08710 0.55 +1.0
1,834,579 + BWI76_RS08710 0.55 +1.1
1,834,579 + BWI76_RS08710 0.55 +1.0
1,834,579 + BWI76_RS08710 0.55 -0.5
1,834,579 + BWI76_RS08710 0.55 +0.5
1,834,579 + BWI76_RS08710 0.55 -0.5
1,834,580 - BWI76_RS08710 0.56 -0.5
1,834,585 - BWI76_RS08710 0.58 -0.2
1,834,587 - BWI76_RS08710 0.59 -1.0
1,834,587 - BWI76_RS08710 0.59 +0.2
1,834,587 - BWI76_RS08710 0.59 -0.7
1,834,587 - BWI76_RS08710 0.59 +0.9
1,834,587 - BWI76_RS08710 0.59 -1.5
1,834,587 - BWI76_RS08710 0.59 +0.0
1,834,587 - BWI76_RS08710 0.59 +0.1
1,834,587 - BWI76_RS08710 0.59 -0.4
1,834,587 - BWI76_RS08710 0.59 -1.2
1,834,587 - BWI76_RS08710 0.59 +0.5
1,834,587 - BWI76_RS08710 0.59 -0.2
1,834,587 - BWI76_RS08710 0.59 -1.7
1,834,591 + BWI76_RS08710 0.61 +0.6
1,834,591 + BWI76_RS08710 0.61 +1.5
1,834,591 + BWI76_RS08710 0.61 -0.3
1,834,593 - BWI76_RS08710 0.62 -0.4
1,834,597 - BWI76_RS08710 0.63 -0.7
1,834,597 - BWI76_RS08710 0.63 -2.5
1,834,599 - BWI76_RS08710 0.64 +0.5
1,834,599 - BWI76_RS08710 0.64 +1.0
1,834,599 - BWI76_RS08710 0.64 -0.2
1,834,604 - BWI76_RS08710 0.67 -0.3
1,834,678 + +1.0
1,834,729 + +0.2
1,834,729 + +0.3
1,834,729 + -1.6
1,834,729 + +0.1
1,834,729 + +0.1
1,834,729 + +2.5
1,834,729 + -0.4
1,834,729 + +1.5
1,834,729 + -0.0
1,834,729 + +0.6
1,834,737 - -1.3
1,834,737 - -1.1
1,834,737 - +0.1
1,834,737 - +0.2
1,834,737 - -1.2
1,834,737 - -0.0
1,834,737 - -2.1
1,834,742 + +0.5
1,834,749 + -0.5
1,834,749 + +1.0
1,834,749 + -0.3
1,834,749 + -0.2
1,834,757 - +0.7
1,834,757 - -0.1
1,834,757 - -1.6
1,834,757 - +0.7
1,834,758 - -1.9
1,834,760 + -1.0
1,834,766 + +0.1
1,834,870 + +0.6
1,834,905 + -0.6
1,835,010 + +0.9
1,835,010 + +0.2
1,835,017 + +0.8
1,835,022 + +0.3
1,835,041 + +0.1
1,835,049 - -0.6
1,835,076 - -0.4
1,835,083 - +0.4
1,835,259 - BWI76_RS08715 0.13 -0.1
1,835,260 - BWI76_RS08715 0.13 -1.1
1,835,401 + BWI76_RS08715 0.24 +0.7
1,835,414 + BWI76_RS08715 0.25 +0.8
1,835,416 + BWI76_RS08715 0.25 +0.6
1,835,445 - BWI76_RS08715 0.27 +0.7
1,835,496 + BWI76_RS08715 0.31 +0.2
1,835,504 - BWI76_RS08715 0.32 -0.1
1,835,554 - BWI76_RS08715 0.36 -0.1
1,835,564 - BWI76_RS08715 0.37 +0.6
1,835,564 - BWI76_RS08715 0.37 +0.0

Or see this region's nucleotide sequence