Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1843

Experiment: marine broth 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1842 and Dshi_1843 are separated by 99 nucleotidesDshi_1843 and Dshi_1844 are separated by 104 nucleotidesDshi_1844 and Dshi_1845 are separated by 56 nucleotides Dshi_1842: Dshi_1842 - adenylosuccinate lyase (RefSeq), at 1,923,555 to 1,924,907 _1842 Dshi_1843: Dshi_1843 - hypothetical protein (RefSeq), at 1,925,007 to 1,925,174 _1843 Dshi_1844: Dshi_1844 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,925,279 to 1,925,812 _1844 Dshi_1845: Dshi_1845 - flagellar motor switch protein FliG (RefSeq), at 1,925,869 to 1,926,918 _1845 Position (kb) 1925 1926Strain fitness (log2 ratio) -2 -1 0 1at 1924.974 kb on + strandat 1925.056 kb on + strand, within Dshi_1843at 1925.064 kb on - strand, within Dshi_1843at 1925.111 kb on - strand, within Dshi_1843at 1925.257 kb on + strandat 1925.265 kb on - strandat 1925.318 kb on + strandat 1925.398 kb on - strand, within Dshi_1844at 1925.443 kb on - strand, within Dshi_1844at 1925.614 kb on + strand, within Dshi_1844at 1925.662 kb on + strand, within Dshi_1844at 1925.670 kb on - strand, within Dshi_1844at 1925.762 kb on + strandat 1925.967 kb on - strandat 1926.051 kb on + strand, within Dshi_1845at 1926.083 kb on - strand, within Dshi_1845at 1926.116 kb on + strand, within Dshi_1845at 1926.120 kb on + strand, within Dshi_1845at 1926.124 kb on - strand, within Dshi_1845

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth 37C
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1,924,974 + +0.3
1,925,056 + Dshi_1843 0.29 -1.7
1,925,064 - Dshi_1843 0.34 -0.4
1,925,111 - Dshi_1843 0.62 +0.0
1,925,257 + +1.7
1,925,265 - +0.5
1,925,318 + +0.3
1,925,398 - Dshi_1844 0.22 +1.0
1,925,443 - Dshi_1844 0.31 -0.0
1,925,614 + Dshi_1844 0.63 -1.8
1,925,662 + Dshi_1844 0.72 +0.4
1,925,670 - Dshi_1844 0.73 -0.5
1,925,762 + +0.5
1,925,967 - -0.1
1,926,051 + Dshi_1845 0.17 -0.8
1,926,083 - Dshi_1845 0.20 +0.1
1,926,116 + Dshi_1845 0.24 -0.0
1,926,120 + Dshi_1845 0.24 -0.6
1,926,124 - Dshi_1845 0.24 +0.7

Or see this region's nucleotide sequence