Experiment: MoLS4 with L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaC-1 and DVU0382 are separated by 81 nucleotides DVU0382 and DVU0383 are separated by 180 nucleotides DVU0383 and flr are separated by 358 nucleotides
DVU0381: nhaC-1 - Na+/H+ antiporter NhaC (TIGR), at 431,111 to 432,502
nhaC-1
DVU0382: DVU0382 - hypothetical protein (TIGR), at 432,584 to 432,883
DVU0382
DVU0383: DVU0383 - hypothetical protein (TIGR), at 433,064 to 433,453
DVU0383
DVU0384: flr - flavoredoxin (TIGR), at 433,812 to 434,384
flr
Position (kb) 433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 432.083 kb on - strand, within nhaC-1 at 432.088 kb on - strand, within nhaC-1 at 432.096 kb on + strand, within nhaC-1 at 432.152 kb on - strand, within nhaC-1 at 432.183 kb on - strand, within nhaC-1 at 432.206 kb on - strand, within nhaC-1 at 432.305 kb on + strand, within nhaC-1 at 432.337 kb on + strand, within nhaC-1 at 432.340 kb on - strand, within nhaC-1 at 432.389 kb on - strand at 432.463 kb on - strand at 432.660 kb on + strand, within DVU0382 at 432.713 kb on + strand, within DVU0382 at 432.715 kb on + strand, within DVU0382 at 432.955 kb on - strand at 432.960 kb on + strand at 432.968 kb on - strand at 432.994 kb on - strand at 432.996 kb on - strand at 433.077 kb on + strand at 433.079 kb on + strand at 433.102 kb on + strand at 433.129 kb on - strand, within DVU0383 at 433.152 kb on - strand, within DVU0383 at 433.224 kb on - strand, within DVU0383 at 433.235 kb on + strand, within DVU0383 at 433.235 kb on + strand, within DVU0383 at 433.240 kb on + strand, within DVU0383 at 433.245 kb on + strand, within DVU0383 at 433.248 kb on - strand, within DVU0383 at 433.248 kb on - strand, within DVU0383 at 433.253 kb on - strand, within DVU0383 at 433.307 kb on + strand, within DVU0383 at 433.315 kb on - strand, within DVU0383 at 433.317 kb on + strand, within DVU0383 at 433.332 kb on + strand, within DVU0383 at 433.351 kb on - strand, within DVU0383 at 433.376 kb on - strand, within DVU0383 at 433.388 kb on - strand, within DVU0383 at 433.403 kb on - strand, within DVU0383 at 433.446 kb on + strand at 433.446 kb on + strand at 433.489 kb on + strand at 433.513 kb on - strand at 433.537 kb on + strand at 433.634 kb on - strand at 433.644 kb on + strand at 433.656 kb on - strand at 433.656 kb on - strand at 433.741 kb on + strand at 433.741 kb on + strand at 433.766 kb on - strand at 433.936 kb on + strand, within flr at 433.936 kb on - strand, within flr at 433.997 kb on - strand, within flr at 434.052 kb on + strand, within flr at 434.101 kb on + strand, within flr at 434.174 kb on + strand, within flr at 434.226 kb on + strand, within flr at 434.264 kb on - strand, within flr at 434.269 kb on - strand, within flr at 434.298 kb on - strand, within flr at 434.393 kb on + strand at 434.398 kb on + strand at 434.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N) remove 432,083 - nhaC-1 DVU0381 0.70 +0.5 432,088 - nhaC-1 DVU0381 0.70 -0.3 432,096 + nhaC-1 DVU0381 0.71 -0.8 432,152 - nhaC-1 DVU0381 0.75 -0.8 432,183 - nhaC-1 DVU0381 0.77 -0.6 432,206 - nhaC-1 DVU0381 0.79 -0.4 432,305 + nhaC-1 DVU0381 0.86 -0.6 432,337 + nhaC-1 DVU0381 0.88 +0.0 432,340 - nhaC-1 DVU0381 0.88 -0.3 432,389 - +0.0 432,463 - +0.2 432,660 + DVU0382 0.25 -0.4 432,713 + DVU0382 0.43 +0.8 432,715 + DVU0382 0.44 +0.5 432,955 - -0.1 432,960 + -0.3 432,968 - -0.6 432,994 - -0.2 432,996 - -0.1 433,077 + +0.2 433,079 + -0.6 433,102 + -0.1 433,129 - DVU0383 0.17 +0.8 433,152 - DVU0383 0.23 -0.0 433,224 - DVU0383 0.41 +0.5 433,235 + DVU0383 0.44 -0.2 433,235 + DVU0383 0.44 +0.6 433,240 + DVU0383 0.45 -0.5 433,245 + DVU0383 0.46 +0.6 433,248 - DVU0383 0.47 -1.9 433,248 - DVU0383 0.47 +1.0 433,253 - DVU0383 0.48 +0.5 433,307 + DVU0383 0.62 +0.4 433,315 - DVU0383 0.64 -0.5 433,317 + DVU0383 0.65 +0.2 433,332 + DVU0383 0.69 -0.0 433,351 - DVU0383 0.74 -0.5 433,376 - DVU0383 0.80 -0.7 433,388 - DVU0383 0.83 -0.2 433,403 - DVU0383 0.87 -1.6 433,446 + +0.1 433,446 + -0.3 433,489 + -0.1 433,513 - +1.0 433,537 + -0.3 433,634 - -0.2 433,644 + -0.9 433,656 - +0.2 433,656 - -1.0 433,741 + +0.4 433,741 + -0.6 433,766 - +0.5 433,936 + flr DVU0384 0.22 +0.9 433,936 - flr DVU0384 0.22 +1.0 433,997 - flr DVU0384 0.32 +2.1 434,052 + flr DVU0384 0.42 +4.2 434,101 + flr DVU0384 0.50 +0.5 434,174 + flr DVU0384 0.63 +1.7 434,226 + flr DVU0384 0.72 +2.0 434,264 - flr DVU0384 0.79 +1.9 434,269 - flr DVU0384 0.80 -0.6 434,298 - flr DVU0384 0.85 +1.3 434,393 + +1.2 434,398 + +0.5 434,401 - -2.9
Or see this region's nucleotide sequence