Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3234

Experiment: MoLS4 with L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflhB and DVU3234 are separated by 124 nucleotidesDVU3234 and purH are separated by 104 nucleotides DVU3233: flhB - flagellar biosynthetic protein FlhB (TIGR), at 3,401,682 to 3,402,755 flhB DVU3234: DVU3234 - flagellar biosynthetic protein FliR (TIGR), at 3,402,880 to 3,403,671 DVU3234 DVU3235: purH - IMP cyclohydrolase, putative (TIGR), at 3,403,776 to 3,404,378 purH Position (kb) 3402 3403 3404Strain fitness (log2 ratio) -3 -2 -1 0 1at 3401.923 kb on - strand, within flhBat 3401.950 kb on - strand, within flhBat 3401.998 kb on + strand, within flhBat 3401.999 kb on - strand, within flhBat 3402.006 kb on - strand, within flhBat 3402.026 kb on + strand, within flhBat 3402.111 kb on + strand, within flhBat 3402.124 kb on + strand, within flhBat 3402.231 kb on + strand, within flhBat 3402.311 kb on - strand, within flhBat 3402.378 kb on - strand, within flhBat 3402.424 kb on + strand, within flhBat 3402.425 kb on + strand, within flhBat 3402.425 kb on + strand, within flhBat 3402.465 kb on - strand, within flhBat 3402.505 kb on + strand, within flhBat 3402.505 kb on + strand, within flhBat 3402.513 kb on - strand, within flhBat 3402.663 kb on - strandat 3402.725 kb on + strandat 3402.733 kb on - strandat 3402.758 kb on + strandat 3402.766 kb on - strandat 3402.766 kb on - strandat 3402.766 kb on - strandat 3402.787 kb on + strandat 3402.887 kb on + strandat 3402.894 kb on + strandat 3402.894 kb on + strandat 3402.894 kb on + strandat 3402.894 kb on + strandat 3402.895 kb on - strandat 3402.895 kb on - strandat 3402.902 kb on - strandat 3402.902 kb on - strandat 3402.902 kb on - strandat 3402.902 kb on - strandat 3402.902 kb on - strandat 3402.902 kb on - strandat 3402.902 kb on - strandat 3402.902 kb on - strandat 3402.921 kb on - strandat 3402.921 kb on - strandat 3402.950 kb on + strandat 3402.956 kb on - strandat 3403.057 kb on + strand, within DVU3234at 3403.065 kb on - strand, within DVU3234at 3403.262 kb on - strand, within DVU3234at 3403.267 kb on - strand, within DVU3234at 3403.331 kb on + strand, within DVU3234at 3403.382 kb on + strand, within DVU3234at 3403.417 kb on + strand, within DVU3234at 3403.420 kb on - strand, within DVU3234at 3403.427 kb on + strand, within DVU3234at 3403.448 kb on - strand, within DVU3234at 3403.490 kb on + strand, within DVU3234at 3403.555 kb on - strand, within DVU3234at 3403.593 kb on - strandat 3403.595 kb on + strandat 3403.721 kb on + strandat 3404.277 kb on + strand, within purHat 3404.381 kb on - strandat 3404.381 kb on - strandat 3404.381 kb on - strandat 3404.445 kb on + strandat 3404.543 kb on - strandat 3404.588 kb on - strandat 3404.588 kb on - strandat 3404.612 kb on + strandat 3404.631 kb on + strandat 3404.631 kb on + strandat 3404.647 kb on + strandat 3404.647 kb on + strandat 3404.647 kb on + strandat 3404.655 kb on - strandat 3404.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
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3,401,923 - flhB DVU3233 0.22 -1.3
3,401,950 - flhB DVU3233 0.25 -1.3
3,401,998 + flhB DVU3233 0.29 -1.3
3,401,999 - flhB DVU3233 0.30 -0.4
3,402,006 - flhB DVU3233 0.30 -0.3
3,402,026 + flhB DVU3233 0.32 -1.4
3,402,111 + flhB DVU3233 0.40 -0.9
3,402,124 + flhB DVU3233 0.41 -1.2
3,402,231 + flhB DVU3233 0.51 -1.7
3,402,311 - flhB DVU3233 0.59 -0.0
3,402,378 - flhB DVU3233 0.65 -1.1
3,402,424 + flhB DVU3233 0.69 -1.4
3,402,425 + flhB DVU3233 0.69 -2.6
3,402,425 + flhB DVU3233 0.69 -2.0
3,402,465 - flhB DVU3233 0.73 -0.7
3,402,505 + flhB DVU3233 0.77 -1.9
3,402,505 + flhB DVU3233 0.77 -1.4
3,402,513 - flhB DVU3233 0.77 -3.5
3,402,663 - -0.8
3,402,725 + -1.3
3,402,733 - -0.8
3,402,758 + -0.5
3,402,766 - -0.1
3,402,766 - -0.0
3,402,766 - -0.2
3,402,787 + -0.7
3,402,887 + +0.3
3,402,894 + +0.7
3,402,894 + +1.1
3,402,894 + +0.7
3,402,894 + -0.5
3,402,895 - -0.1
3,402,895 - +0.1
3,402,902 - +0.3
3,402,902 - -0.2
3,402,902 - +0.1
3,402,902 - +0.1
3,402,902 - -0.2
3,402,902 - -0.4
3,402,902 - +0.3
3,402,902 - -0.0
3,402,921 - +0.6
3,402,921 - -0.4
3,402,950 + +0.0
3,402,956 - -0.7
3,403,057 + DVU3234 0.22 -1.2
3,403,065 - DVU3234 0.23 -2.1
3,403,262 - DVU3234 0.48 -2.8
3,403,267 - DVU3234 0.49 -1.4
3,403,331 + DVU3234 0.57 -1.2
3,403,382 + DVU3234 0.63 -1.6
3,403,417 + DVU3234 0.68 -1.2
3,403,420 - DVU3234 0.68 -0.9
3,403,427 + DVU3234 0.69 -2.0
3,403,448 - DVU3234 0.72 -0.6
3,403,490 + DVU3234 0.77 +1.7
3,403,555 - DVU3234 0.85 -0.9
3,403,593 - -1.1
3,403,595 + -1.3
3,403,721 + -0.7
3,404,277 + purH DVU3235 0.83 +0.7
3,404,381 - +1.0
3,404,381 - -0.5
3,404,381 - +0.4
3,404,445 + -0.6
3,404,543 - -0.7
3,404,588 - +1.3
3,404,588 - -1.2
3,404,612 + -2.1
3,404,631 + +1.3
3,404,631 + -1.7
3,404,647 + -0.6
3,404,647 + -1.0
3,404,647 + +1.2
3,404,655 - -0.2
3,404,655 - -0.3

Or see this region's nucleotide sequence