Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2326

Experiment: MoLS4 with L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2324 and merP are separated by 272 nucleotidesmerP and DVU2326 are separated by 96 nucleotidesDVU2326 and DORF17147 overlap by 1 nucleotidesDORF17147 and hypA are separated by 273 nucleotides DVU2324: DVU2324 - copper-translocating P-type ATPase (TIGR), at 2,419,638 to 2,422,355 DVU2324 DVU2325: merP - mercuric transport protein periplasmic component (TIGR), at 2,422,628 to 2,422,825 merP DVU2326: DVU2326 - conserved domain protein (TIGR), at 2,422,922 to 2,423,824 DVU2326 DORF17147: DORF17147 - SEED: TPR domain protein, at 2,423,824 to 2,424,540 DORF17147 DVU2328: hypA - hydrogenase nickel insertion protein HypA, putative (TIGR), at 2,424,814 to 2,425,167 hypA Position (kb) 2422 2423 2424Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2421.960 kb on + strand, within DVU2324at 2421.963 kb on - strand, within DVU2324at 2421.967 kb on + strand, within DVU2324at 2421.968 kb on - strand, within DVU2324at 2421.968 kb on - strand, within DVU2324at 2422.019 kb on + strand, within DVU2324at 2422.204 kb on + strandat 2422.204 kb on + strandat 2422.204 kb on + strandat 2422.204 kb on + strandat 2422.212 kb on - strandat 2422.254 kb on - strandat 2422.392 kb on + strandat 2422.400 kb on - strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.423 kb on + strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.431 kb on - strandat 2422.480 kb on + strandat 2422.483 kb on - strandat 2422.488 kb on - strandat 2422.752 kb on - strand, within merPat 2422.808 kb on + strandat 2422.816 kb on - strandat 2422.914 kb on + strandat 2423.022 kb on - strand, within DVU2326at 2423.045 kb on - strand, within DVU2326at 2423.133 kb on + strand, within DVU2326at 2423.141 kb on - strand, within DVU2326at 2423.141 kb on - strand, within DVU2326at 2423.157 kb on + strand, within DVU2326at 2423.247 kb on + strand, within DVU2326at 2423.334 kb on - strand, within DVU2326at 2423.385 kb on + strand, within DVU2326at 2423.387 kb on + strand, within DVU2326at 2423.388 kb on - strand, within DVU2326at 2423.393 kb on - strand, within DVU2326at 2423.422 kb on + strand, within DVU2326at 2423.435 kb on + strand, within DVU2326at 2423.512 kb on + strand, within DVU2326at 2423.544 kb on - strand, within DVU2326at 2423.569 kb on - strand, within DVU2326at 2423.783 kb on + strandat 2423.791 kb on - strandat 2423.960 kb on - strand, within DORF17147at 2424.014 kb on + strand, within DORF17147at 2424.080 kb on + strand, within DORF17147at 2424.145 kb on + strand, within DORF17147at 2424.320 kb on - strand, within DORF17147at 2424.389 kb on + strand, within DORF17147at 2424.402 kb on - strand, within DORF17147at 2424.411 kb on + strand, within DORF17147at 2424.437 kb on + strand, within DORF17147at 2424.449 kb on + strand, within DORF17147at 2424.464 kb on + strand, within DORF17147at 2424.464 kb on + strand, within DORF17147at 2424.473 kb on + strandat 2424.511 kb on - strandat 2424.558 kb on + strandat 2424.566 kb on + strandat 2424.612 kb on + strandat 2424.620 kb on - strandat 2424.720 kb on + strandat 2424.748 kb on + strandat 2424.785 kb on + strandat 2424.817 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
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2,421,960 + DVU2324 0.85 +0.5
2,421,963 - DVU2324 0.86 -0.5
2,421,967 + DVU2324 0.86 +1.3
2,421,968 - DVU2324 0.86 +0.6
2,421,968 - DVU2324 0.86 +0.8
2,422,019 + DVU2324 0.88 -1.0
2,422,204 + -0.3
2,422,204 + -0.0
2,422,204 + +0.3
2,422,204 + -0.7
2,422,212 - +0.2
2,422,254 - +1.1
2,422,392 + -1.4
2,422,400 - +2.1
2,422,423 + -0.0
2,422,423 + -0.1
2,422,423 + +0.5
2,422,423 + -0.1
2,422,423 + -0.3
2,422,423 + +0.2
2,422,423 + -0.2
2,422,423 + -0.2
2,422,423 + -0.2
2,422,431 - -0.7
2,422,431 - +0.0
2,422,431 - +0.8
2,422,431 - +0.7
2,422,431 - -0.0
2,422,431 - -0.4
2,422,431 - -0.1
2,422,431 - -2.3
2,422,431 - -0.4
2,422,431 - -0.3
2,422,431 - -0.1
2,422,431 - -0.6
2,422,431 - -0.2
2,422,431 - +0.9
2,422,431 - -0.6
2,422,431 - +0.3
2,422,480 + +0.5
2,422,483 - +0.9
2,422,488 - +0.3
2,422,752 - merP DVU2325 0.63 -0.7
2,422,808 + -0.1
2,422,816 - +0.1
2,422,914 + +0.2
2,423,022 - DVU2326 0.11 +0.3
2,423,045 - DVU2326 0.14 +0.3
2,423,133 + DVU2326 0.23 -0.4
2,423,141 - DVU2326 0.24 +0.1
2,423,141 - DVU2326 0.24 -0.1
2,423,157 + DVU2326 0.26 -0.1
2,423,247 + DVU2326 0.36 +0.1
2,423,334 - DVU2326 0.46 +0.4
2,423,385 + DVU2326 0.51 +1.1
2,423,387 + DVU2326 0.51 +0.6
2,423,388 - DVU2326 0.52 +0.0
2,423,393 - DVU2326 0.52 +0.0
2,423,422 + DVU2326 0.55 +0.3
2,423,435 + DVU2326 0.57 +0.0
2,423,512 + DVU2326 0.65 -0.0
2,423,544 - DVU2326 0.69 +0.3
2,423,569 - DVU2326 0.72 -0.2
2,423,783 + -0.1
2,423,791 - +0.5
2,423,960 - DORF17147 0.19 +1.5
2,424,014 + DORF17147 0.26 -0.0
2,424,080 + DORF17147 0.36 +1.0
2,424,145 + DORF17147 0.45 -0.2
2,424,320 - DORF17147 0.69 -1.0
2,424,389 + DORF17147 0.79 +0.5
2,424,402 - DORF17147 0.81 +3.3
2,424,411 + DORF17147 0.82 -0.8
2,424,437 + DORF17147 0.85 +0.2
2,424,449 + DORF17147 0.87 +0.0
2,424,464 + DORF17147 0.89 -1.0
2,424,464 + DORF17147 0.89 -0.5
2,424,473 + +0.2
2,424,511 - +0.7
2,424,558 + +0.3
2,424,566 + -0.1
2,424,612 + +0.2
2,424,620 - +0.3
2,424,720 + -0.3
2,424,748 + +0.2
2,424,785 + -1.5
2,424,817 + -2.1

Or see this region's nucleotide sequence