Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0911

Experiment: MoLS4 with L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfliM and truA are separated by 599 nucleotidestruA and DVU0912 are separated by 1 nucleotidesDVU0912 and DVU0913 are separated by 76 nucleotides DVU0910: fliM - flagellar motor switch protein FliM (TIGR), at 1,004,227 to 1,005,207 fliM DVU0911: truA - tRNA pseudouridine synthase A (TIGR), at 1,005,807 to 1,006,700 truA DVU0912: DVU0912 - conserved domain protein (TIGR), at 1,006,702 to 1,007,286 DVU0912 DVU0913: DVU0913 - conserved hypothetical protein (TIGR), at 1,007,363 to 1,007,800 DVU0913 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -3 -2 -1 0 1at 1004.903 kb on + strand, within fliMat 1004.945 kb on - strand, within fliMat 1004.979 kb on + strand, within fliMat 1005.058 kb on - strand, within fliMat 1005.065 kb on - strand, within fliMat 1005.083 kb on - strand, within fliMat 1005.121 kb on - strandat 1005.229 kb on - strandat 1005.379 kb on + strandat 1005.482 kb on + strandat 1005.533 kb on - strandat 1005.577 kb on - strandat 1005.680 kb on + strandat 1005.723 kb on - strandat 1005.807 kb on - strandat 1005.963 kb on - strand, within truAat 1006.088 kb on - strand, within truAat 1006.112 kb on - strand, within truAat 1006.112 kb on - strand, within truAat 1006.130 kb on - strand, within truAat 1006.263 kb on + strand, within truAat 1006.270 kb on + strand, within truAat 1006.271 kb on - strand, within truAat 1006.294 kb on + strand, within truAat 1006.307 kb on - strand, within truAat 1006.313 kb on + strand, within truAat 1006.346 kb on + strand, within truAat 1006.482 kb on - strand, within truAat 1006.617 kb on - strandat 1006.643 kb on - strandat 1006.651 kb on - strandat 1006.689 kb on + strandat 1006.693 kb on - strandat 1006.841 kb on + strand, within DVU0912at 1006.841 kb on - strand, within DVU0912at 1006.921 kb on + strand, within DVU0912at 1006.931 kb on + strand, within DVU0912at 1007.188 kb on + strand, within DVU0912at 1007.222 kb on + strand, within DVU0912at 1007.222 kb on + strand, within DVU0912at 1007.285 kb on + strandat 1007.295 kb on + strandat 1007.303 kb on - strandat 1007.547 kb on + strand, within DVU0913at 1007.555 kb on - strand, within DVU0913at 1007.576 kb on + strand, within DVU0913at 1007.584 kb on - strand, within DVU0913at 1007.584 kb on - strand, within DVU0913at 1007.690 kb on - strand, within DVU0913

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Alanine (N)
remove
1,004,903 + fliM DVU0910 0.69 -0.6
1,004,945 - fliM DVU0910 0.73 -1.4
1,004,979 + fliM DVU0910 0.77 -2.2
1,005,058 - fliM DVU0910 0.85 -1.2
1,005,065 - fliM DVU0910 0.85 -1.5
1,005,083 - fliM DVU0910 0.87 -0.6
1,005,121 - +0.8
1,005,229 - -0.0
1,005,379 + -0.2
1,005,482 + +1.1
1,005,533 - -0.5
1,005,577 - -0.2
1,005,680 + +0.5
1,005,723 - -0.5
1,005,807 - +0.2
1,005,963 - truA DVU0911 0.17 +0.6
1,006,088 - truA DVU0911 0.31 -1.0
1,006,112 - truA DVU0911 0.34 -0.0
1,006,112 - truA DVU0911 0.34 -0.8
1,006,130 - truA DVU0911 0.36 +0.6
1,006,263 + truA DVU0911 0.51 +0.1
1,006,270 + truA DVU0911 0.52 +0.8
1,006,271 - truA DVU0911 0.52 +0.5
1,006,294 + truA DVU0911 0.54 -2.3
1,006,307 - truA DVU0911 0.56 -0.5
1,006,313 + truA DVU0911 0.57 -1.1
1,006,346 + truA DVU0911 0.60 -0.6
1,006,482 - truA DVU0911 0.76 -1.1
1,006,617 - -1.2
1,006,643 - -1.2
1,006,651 - -1.9
1,006,689 + -0.7
1,006,693 - -0.9
1,006,841 + DVU0912 0.24 -1.5
1,006,841 - DVU0912 0.24 +0.8
1,006,921 + DVU0912 0.37 -1.0
1,006,931 + DVU0912 0.39 -2.8
1,007,188 + DVU0912 0.83 -0.2
1,007,222 + DVU0912 0.89 -0.9
1,007,222 + DVU0912 0.89 -1.1
1,007,285 + -1.4
1,007,295 + -1.1
1,007,303 - +1.2
1,007,547 + DVU0913 0.42 +0.2
1,007,555 - DVU0913 0.44 -1.4
1,007,576 + DVU0913 0.49 -0.8
1,007,584 - DVU0913 0.50 +0.4
1,007,584 - DVU0913 0.50 -1.0
1,007,690 - DVU0913 0.75 -1.7

Or see this region's nucleotide sequence