Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.794.1 and Xcc-8004.795.1 are separated by 49 nucleotides Xcc-8004.795.1 and Xcc-8004.797.1 are separated by 140 nucleotides
Xcc-8004.794.1: Xcc-8004.794.1 - M. jannaschii predicted coding region MJ1233, at 737,789 to 738,991
Xcc-8004.794.1
Xcc-8004.795.1: Xcc-8004.795.1 - Membrane protein, putative, at 739,041 to 739,916
Xcc-8004.795.1
Xcc-8004.797.1: Xcc-8004.797.1 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 740,057 to 740,827
Xcc-8004.797.1
Position (kb) 739
740 Strain fitness (log2 ratio) -2
-1
0
1 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.226 kb on - strand, within Xcc-8004.794.1 at 738.441 kb on + strand, within Xcc-8004.794.1 at 738.574 kb on + strand, within Xcc-8004.794.1 at 738.575 kb on - strand, within Xcc-8004.794.1 at 738.630 kb on + strand, within Xcc-8004.794.1 at 738.630 kb on + strand, within Xcc-8004.794.1 at 738.705 kb on + strand, within Xcc-8004.794.1 at 738.705 kb on + strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.742 kb on + strand, within Xcc-8004.794.1 at 738.742 kb on + strand, within Xcc-8004.794.1 at 738.743 kb on - strand, within Xcc-8004.794.1 at 738.770 kb on - strand, within Xcc-8004.794.1 at 738.925 kb on + strand at 738.925 kb on + strand at 738.929 kb on - strand at 738.929 kb on - strand at 738.982 kb on - strand at 739.135 kb on - strand, within Xcc-8004.795.1 at 739.570 kb on - strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.707 kb on + strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.752 kb on + strand, within Xcc-8004.795.1 at 739.786 kb on - strand, within Xcc-8004.795.1 at 739.928 kb on + strand at 740.091 kb on + strand at 740.092 kb on - strand at 740.092 kb on - strand at 740.133 kb on + strand at 740.134 kb on - strand, within Xcc-8004.797.1 at 740.704 kb on - strand, within Xcc-8004.797.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 738,225 + Xcc-8004.794.1 0.36 +0.6 738,225 + Xcc-8004.794.1 0.36 -1.3 738,226 - Xcc-8004.794.1 0.36 -0.7 738,441 + Xcc-8004.794.1 0.54 -2.1 738,574 + Xcc-8004.794.1 0.65 -1.5 738,575 - Xcc-8004.794.1 0.65 +1.5 738,630 + Xcc-8004.794.1 0.70 -0.5 738,630 + Xcc-8004.794.1 0.70 -2.5 738,705 + Xcc-8004.794.1 0.76 -0.5 738,705 + Xcc-8004.794.1 0.76 +0.1 738,706 - Xcc-8004.794.1 0.76 +0.7 738,706 - Xcc-8004.794.1 0.76 +1.0 738,706 - Xcc-8004.794.1 0.76 -1.1 738,706 - Xcc-8004.794.1 0.76 -1.0 738,742 + Xcc-8004.794.1 0.79 -1.6 738,742 + Xcc-8004.794.1 0.79 -1.3 738,743 - Xcc-8004.794.1 0.79 -1.2 738,770 - Xcc-8004.794.1 0.82 +1.2 738,925 + +0.7 738,925 + -1.0 738,929 - +0.2 738,929 - -0.8 738,982 - +0.8 739,135 - Xcc-8004.795.1 0.11 -0.2 739,570 - Xcc-8004.795.1 0.60 +0.9 739,644 + Xcc-8004.795.1 0.69 -0.7 739,644 + Xcc-8004.795.1 0.69 +1.5 739,645 - Xcc-8004.795.1 0.69 +0.1 739,645 - Xcc-8004.795.1 0.69 +0.6 739,707 + Xcc-8004.795.1 0.76 -0.6 739,708 - Xcc-8004.795.1 0.76 -0.1 739,708 - Xcc-8004.795.1 0.76 +0.8 739,708 - Xcc-8004.795.1 0.76 -2.3 739,752 + Xcc-8004.795.1 0.81 -1.9 739,786 - Xcc-8004.795.1 0.85 -0.9 739,928 + +1.7 740,091 + +1.1 740,092 - -0.8 740,092 - +0.6 740,133 + +0.1 740,134 - Xcc-8004.797.1 0.10 -0.5 740,704 - Xcc-8004.797.1 0.84 -2.1
Or see this region's nucleotide sequence