Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2966.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
2,895,786	+				+0.7
2,895,786	+				-0.3
2,895,787	-				-0.3
2,895,787	-				+0.1
2,895,835	+				+0.5
2,895,835	+				+0.2
2,895,835	+				-1.7
2,895,835	+				+0.7
2,895,835	+				+0.6
2,895,835	+				-1.1
2,895,836	-				+0.8
2,895,836	-				-0.3
2,895,836	-				+1.6
2,895,836	-				-0.8
2,895,836	-				+0.6
2,895,836	-				-0.7
2,895,863	+				-0.6
2,895,922	+				+1.7
2,895,922	+				+1.3
2,895,923	-				-0.2
2,895,923	-				+1.3
2,896,097	+				-0.3
2,896,223	-				-0.2
2,896,223	-				+0.8
2,896,223	-				+0.4
2,896,223	-				+0.1
2,896,223	-				+1.0
2,896,349	+				-2.3
2,896,390	+				+0.3
2,896,588	+				-0.2
2,896,717	+				+1.3
2,896,891	+		Xcc-8004.2966.1	0.12	+0.1
2,896,892	-		Xcc-8004.2966.1	0.12	-0.6
2,896,892	-		Xcc-8004.2966.1	0.12	-0.3
2,896,899	+		Xcc-8004.2966.1	0.12	-1.2
2,896,899	+		Xcc-8004.2966.1	0.12	-0.5
2,897,170	+		Xcc-8004.2966.1	0.28	+0.9
2,897,170	+		Xcc-8004.2966.1	0.28	-0.9
2,897,170	+		Xcc-8004.2966.1	0.28	-1.3
2,897,170	+		Xcc-8004.2966.1	0.28	+0.9
2,897,171	-		Xcc-8004.2966.1	0.28	+0.0
2,897,249	-		Xcc-8004.2966.1	0.33	-0.3
2,897,266	+		Xcc-8004.2966.1	0.34	-0.7
2,897,267	-		Xcc-8004.2966.1	0.34	+2.1
2,897,323	+		Xcc-8004.2966.1	0.37	-2.2
2,897,323	+		Xcc-8004.2966.1	0.37	+0.9
2,897,324	-		Xcc-8004.2966.1	0.37	-0.3
2,897,473	+		Xcc-8004.2966.1	0.46	-0.7
2,897,479	+		Xcc-8004.2966.1	0.46	-0.8
2,897,479	+		Xcc-8004.2966.1	0.46	-0.7
2,897,527	+		Xcc-8004.2966.1	0.49	+1.6
2,897,527	+		Xcc-8004.2966.1	0.49	+1.2
2,897,528	-		Xcc-8004.2966.1	0.49	+2.1
2,897,528	-		Xcc-8004.2966.1	0.49	-0.4
2,897,528	-		Xcc-8004.2966.1	0.49	-0.5
2,897,528	-		Xcc-8004.2966.1	0.49	-0.1
2,897,588	-		Xcc-8004.2966.1	0.53	-0.3
2,897,634	+		Xcc-8004.2966.1	0.56	-1.0
2,897,695	-		Xcc-8004.2966.1	0.59	-0.6
2,898,138	+		Xcc-8004.2966.1	0.85	-0.2
2,898,138	+		Xcc-8004.2966.1	0.85	-0.5
2,898,138	+		Xcc-8004.2966.1	0.85	-0.5
2,898,138	+		Xcc-8004.2966.1	0.85	-1.2
2,898,138	+		Xcc-8004.2966.1	0.85	-0.2
2,898,138	+		Xcc-8004.2966.1	0.85	+0.5
2,898,138	+		Xcc-8004.2966.1	0.85	-2.0
2,898,138	+		Xcc-8004.2966.1	0.85	+0.1
2,898,138	+		Xcc-8004.2966.1	0.85	+0.3
2,898,139	-		Xcc-8004.2966.1	0.85	-0.8
2,898,139	-		Xcc-8004.2966.1	0.85	+0.7
2,898,139	-		Xcc-8004.2966.1	0.85	-0.8
2,898,139	-		Xcc-8004.2966.1	0.85	+0.2
2,898,139	-		Xcc-8004.2966.1	0.85	+0.4
2,898,139	-		Xcc-8004.2966.1	0.85	+1.3
2,898,139	-		Xcc-8004.2966.1	0.85	-0.2
2,898,139	-		Xcc-8004.2966.1	0.85	-0.4
2,898,182	+		Xcc-8004.2966.1	0.88	-0.4
2,898,183	-		Xcc-8004.2966.1	0.88	-0.2
2,898,183	-		Xcc-8004.2966.1	0.88	+0.3
2,898,183	-		Xcc-8004.2966.1	0.88	-0.9
2,898,183	-		Xcc-8004.2966.1	0.88	-1.4
2,898,183	-		Xcc-8004.2966.1	0.88	-1.1
2,898,349	-				+0.6
2,898,349	-				+1.0
2,898,416	-				-1.5
2,898,540	+				-2.9
2,898,540	+				-0.1
2,898,540	+				+2.2
2,898,541	-				-0.1
2,898,541	-				+0.1
2,898,541	-				-1.4
2,898,541	-				-0.4
2,898,541	-				+0.1
2,898,554	+				+0.7
2,898,554	+				+0.3
2,898,554	+				-0.6
2,898,555	-				+0.4
2,898,555	-				+0.6
2,898,555	-				-0.6
2,898,631	+				-0.0
2,898,631	+				-0.1
2,898,631	+				+0.0
2,898,632	-				+0.4
2,898,632	-				+0.1
2,898,632	-				-2.2
2,898,632	-				+0.9
2,898,632	-				-1.6
2,898,682	-				+0.3
2,898,685	+				+0.7
2,898,686	-				+0.8
2,898,686	-				+1.3
2,898,691	+				-1.3
2,898,692	-				-0.4
2,898,692	-				+0.9
2,898,695	+				+0.0
2,898,695	+				+0.7
2,898,695	+				-0.8
2,898,695	+				+0.3
2,898,696	-				-1.0
2,898,708	+				-1.5
2,898,708	+				-0.8
2,898,708	+				-1.7
2,898,708	+				-1.1
2,898,708	+				+0.7
2,898,708	+				+1.2
2,898,709	-				+0.5
2,898,716	+				-0.7
2,898,716	+				-1.3
2,898,716	+				-1.4
2,898,716	+				-0.8
2,898,716	+				-1.0
2,898,717	-				+0.1
2,898,717	-				-0.1
2,898,717	-				+0.1
2,898,717	-				+1.3
2,898,717	-				-0.8
2,898,717	-				-1.0
2,898,717	-				-0.8
2,898,717	-				-0.3
2,898,717	-				+0.6
2,898,725	+				-2.3
2,898,811	+				+1.4
2,898,811	+				-0.2
2,898,812	-				-2.5
2,898,812	-				+0.1
2,898,818	+				-1.3
2,898,818	+				-0.5
2,898,818	+				+1.4
2,898,818	+				-0.3
2,898,818	+				+0.0
2,898,818	+				+2.1
2,898,818	+				-0.3
2,898,819	-				-1.4
2,898,819	-				-0.3
2,898,819	-				+0.1
2,898,819	-				-1.3
2,898,819	-				+0.6
2,898,819	-				+0.1
2,898,819	-				+0.7
2,898,819	-				+1.7
2,898,819	-				-0.6
2,898,819	-				-0.0
2,898,843	+				+0.1
2,898,843	+				-0.5
2,898,843	+				+0.3
2,898,844	-				-0.0
2,898,844	-				-0.3
2,898,844	-				+0.4
2,898,851	+				-0.7
2,898,851	+				-1.1
2,898,852	-				+0.4
2,898,864	+				-0.7
2,898,864	+				-2.3
2,898,864	+				-1.4
2,898,864	+				-1.0
2,898,864	+				-1.4
2,898,864	+				-1.6
2,898,864	+				-1.5
2,898,864	+				+0.6
2,898,864	+				+0.5
2,898,864	+				+1.5
2,898,865	-				+1.6
2,898,865	-				-0.3
2,898,865	-				-1.5
2,898,865	-				-2.8
2,898,865	-				+0.5
2,898,865	-				-1.9
2,898,865	-				-0.1
2,898,865	-				+0.3
2,898,865	-				-0.6
2,898,865	-				+0.2
2,898,865	-				-0.7
2,898,865	-				+0.4
2,898,865	-				-2.1
2,898,865	-				-0.3
2,898,865	-				-1.0
2,898,865	-				+0.0
2,898,865	-				-0.9
2,898,865	-				-0.7
2,898,868	+				+0.5
2,898,868	+				+0.6
2,898,868	+				-0.7
2,898,868	+				-0.8
2,898,868	+				-0.9
2,898,868	+				-1.7
2,898,868	+				-1.5
2,898,868	+				-0.2
2,898,868	+				-0.9
2,898,869	-				-0.0
2,898,869	-				-0.6
2,898,869	-				+1.2
2,898,869	-				+1.2
2,898,869	-				-2.1
2,898,869	-				-0.1
2,898,869	-				-0.2
2,898,869	-				+1.0
2,898,883	+				-0.8
2,898,883	+				-0.3
2,898,883	+				-1.5
2,898,883	+				+0.8
2,898,883	+				-2.7
2,898,883	+				-2.3
2,898,883	+				-1.1
2,898,883	+				-0.9
2,898,883	+				+0.7
2,898,883	+				-1.3
2,898,883	+				-0.4
2,898,883	+				-0.2
2,898,884	-				-0.2
2,898,884	-				+0.3
2,898,884	-				-0.7
2,898,884	-				-0.8
2,898,884	-				+1.1
2,898,884	-				-0.6
2,898,884	-				+0.3
2,898,884	-				+0.2
2,898,884	-				+0.6
2,898,884	-				-0.3
2,898,884	-				-0.4
2,898,884	-				-0.2
2,898,906	+				+0.3
2,898,906	+				-1.0
2,898,906	+				-0.8
2,898,907	-				-0.0
2,898,907	-				+0.2
2,898,907	-				-0.8
2,898,907	-				-2.7
2,898,907	-				-0.3
2,898,929	+				+0.6
2,898,929	+				+0.4
2,898,929	+				-0.7
2,898,929	+				-0.8
2,898,930	-				-0.1
2,898,930	-				+0.0
2,898,930	-				+0.4
2,898,930	-				-0.6
2,898,930	-				+0.2
2,899,000	+				-0.2
2,899,000	+				-0.3
2,899,000	+				+0.0
2,899,000	+				+1.2
2,899,001	-				-0.1
2,899,001	-				-1.0
2,899,019	+				+0.0
2,899,019	+				+1.2
2,899,019	+				-1.4
2,899,019	+				+0.1
2,899,019	+				-1.0
2,899,019	+				-1.3
2,899,019	+				+0.0
2,899,019	+				+0.6
2,899,019	+				+0.1
2,899,019	+				-2.7
2,899,019	+				-1.4
2,899,019	+				-0.2
2,899,019	+				+0.3
2,899,019	+				-0.9
2,899,020	-				-1.3
2,899,020	-				-0.4
2,899,020	-				-3.1
2,899,020	-				-0.9
2,899,020	-				+0.2
2,899,020	-				-0.1
2,899,020	-				-0.1
2,899,020	-				-0.7
2,899,020	-				+0.8
2,899,020	-				-1.9
2,899,020	-				-0.1
2,899,020	-				-1.8
2,899,020	-				+0.2
2,899,020	-				+0.7
2,899,020	-				+0.0
2,899,020	-				+0.0
2,899,020	-				-1.5
2,899,023	+				+0.3
2,899,023	+				-0.3
2,899,023	+				-1.0
2,899,024	-				-0.5
2,899,024	-				-1.0
2,899,024	-				+1.9
2,899,024	-				+0.6
2,899,024	-				-0.2
2,899,024	-				+0.4
2,899,165	+				+0.8
2,899,201	+				+0.1
2,899,202	-				-1.0
2,899,311	-				+0.1
2,899,311	-				+1.0
2,899,311	-				+0.1
2,899,311	-				-0.2
2,899,328	+				-0.2
2,899,333	+				+1.9
2,899,333	+				+1.1
2,899,333	+				-0.7
2,899,333	+				+0.6
2,899,334	-				-0.1
2,899,334	-				-0.6
2,899,334	-				-2.2
2,899,370	-				-0.3