Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2939.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2937.1 and Xcc-8004.2938.1 are separated by 33 nucleotidesXcc-8004.2938.1 and Xcc-8004.2939.1 are separated by 2 nucleotidesXcc-8004.2939.1 and Xcc-8004.2940.1 are separated by 202 nucleotides Xcc-8004.2937.1: Xcc-8004.2937.1 - Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109), at 2,860,829 to 2,861,482 Xcc-8004.2937.1 Xcc-8004.2938.1: Xcc-8004.2938.1 - 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54), at 2,861,516 to 2,862,082 Xcc-8004.2938.1 Xcc-8004.2939.1: Xcc-8004.2939.1 - 2,3-diketo-5-methylthiopentyl-1-phosphate enolase-phosphatase (EC 3.1.3.77), at 2,862,085 to 2,862,783 Xcc-8004.2939.1 Xcc-8004.2940.1: Xcc-8004.2940.1 - MORN repeat family protein, at 2,862,986 to 2,864,188 Xcc-8004.2940.1 Position (kb) 2862 2863Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2861.111 kb on + strand, within Xcc-8004.2937.1at 2861.111 kb on + strand, within Xcc-8004.2937.1at 2861.111 kb on + strand, within Xcc-8004.2937.1at 2861.112 kb on - strand, within Xcc-8004.2937.1at 2861.183 kb on + strand, within Xcc-8004.2937.1at 2861.183 kb on + strand, within Xcc-8004.2937.1at 2861.183 kb on + strand, within Xcc-8004.2937.1at 2861.184 kb on - strand, within Xcc-8004.2937.1at 2861.184 kb on - strand, within Xcc-8004.2937.1at 2861.184 kb on - strand, within Xcc-8004.2937.1at 2861.184 kb on - strand, within Xcc-8004.2937.1at 2861.184 kb on - strand, within Xcc-8004.2937.1at 2861.184 kb on - strand, within Xcc-8004.2937.1at 2861.184 kb on - strand, within Xcc-8004.2937.1at 2861.216 kb on + strand, within Xcc-8004.2937.1at 2861.216 kb on + strand, within Xcc-8004.2937.1at 2861.216 kb on + strand, within Xcc-8004.2937.1at 2861.216 kb on + strand, within Xcc-8004.2937.1at 2861.216 kb on + strand, within Xcc-8004.2937.1at 2861.217 kb on - strand, within Xcc-8004.2937.1at 2861.217 kb on - strand, within Xcc-8004.2937.1at 2861.217 kb on - strand, within Xcc-8004.2937.1at 2861.245 kb on + strand, within Xcc-8004.2937.1at 2861.245 kb on + strand, within Xcc-8004.2937.1at 2861.245 kb on + strand, within Xcc-8004.2937.1at 2861.245 kb on + strand, within Xcc-8004.2937.1at 2861.246 kb on - strand, within Xcc-8004.2937.1at 2861.246 kb on - strand, within Xcc-8004.2937.1at 2861.354 kb on + strand, within Xcc-8004.2937.1at 2861.354 kb on + strand, within Xcc-8004.2937.1at 2861.355 kb on - strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.378 kb on + strand, within Xcc-8004.2937.1at 2861.379 kb on - strand, within Xcc-8004.2937.1at 2861.379 kb on - strand, within Xcc-8004.2937.1at 2861.379 kb on - strand, within Xcc-8004.2937.1at 2861.480 kb on + strandat 2862.050 kb on + strandat 2862.781 kb on + strandat 2862.781 kb on + strandat 2862.781 kb on + strandat 2862.781 kb on + strandat 2862.782 kb on - strandat 2862.782 kb on - strandat 2862.782 kb on - strandat 2862.916 kb on + strandat 2862.916 kb on + strandat 2862.916 kb on + strandat 2862.916 kb on + strandat 2862.916 kb on + strandat 2862.917 kb on - strandat 2862.917 kb on - strandat 2862.917 kb on - strandat 2862.917 kb on - strandat 2862.959 kb on + strandat 2863.011 kb on - strandat 2863.058 kb on + strandat 2863.058 kb on + strandat 2863.058 kb on + strandat 2863.058 kb on + strandat 2863.058 kb on + strandat 2863.059 kb on - strandat 2863.059 kb on - strandat 2863.059 kb on - strandat 2863.062 kb on + strandat 2863.062 kb on + strandat 2863.062 kb on + strandat 2863.062 kb on + strandat 2863.062 kb on + strandat 2863.062 kb on + strandat 2863.063 kb on - strandat 2863.063 kb on - strandat 2863.105 kb on + strandat 2863.106 kb on + strandat 2863.106 kb on + strandat 2863.106 kb on + strandat 2863.107 kb on - strand, within Xcc-8004.2940.1at 2863.107 kb on - strand, within Xcc-8004.2940.1at 2863.107 kb on - strand, within Xcc-8004.2940.1at 2863.358 kb on + strand, within Xcc-8004.2940.1at 2863.358 kb on + strand, within Xcc-8004.2940.1at 2863.358 kb on + strand, within Xcc-8004.2940.1at 2863.358 kb on + strand, within Xcc-8004.2940.1at 2863.358 kb on + strand, within Xcc-8004.2940.1at 2863.359 kb on - strand, within Xcc-8004.2940.1at 2863.359 kb on - strand, within Xcc-8004.2940.1at 2863.359 kb on - strand, within Xcc-8004.2940.1at 2863.359 kb on - strand, within Xcc-8004.2940.1at 2863.359 kb on - strand, within Xcc-8004.2940.1at 2863.359 kb on - strand, within Xcc-8004.2940.1at 2863.359 kb on - strand, within Xcc-8004.2940.1at 2863.415 kb on + strand, within Xcc-8004.2940.1at 2863.506 kb on - strand, within Xcc-8004.2940.1at 2863.523 kb on + strand, within Xcc-8004.2940.1at 2863.523 kb on + strand, within Xcc-8004.2940.1at 2863.523 kb on + strand, within Xcc-8004.2940.1at 2863.524 kb on - strand, within Xcc-8004.2940.1at 2863.559 kb on - strand, within Xcc-8004.2940.1at 2863.631 kb on + strand, within Xcc-8004.2940.1at 2863.631 kb on + strand, within Xcc-8004.2940.1at 2863.631 kb on + strand, within Xcc-8004.2940.1at 2863.631 kb on + strand, within Xcc-8004.2940.1at 2863.631 kb on + strand, within Xcc-8004.2940.1at 2863.632 kb on - strand, within Xcc-8004.2940.1at 2863.632 kb on - strand, within Xcc-8004.2940.1at 2863.632 kb on - strand, within Xcc-8004.2940.1at 2863.632 kb on - strand, within Xcc-8004.2940.1at 2863.739 kb on + strand, within Xcc-8004.2940.1at 2863.740 kb on - strand, within Xcc-8004.2940.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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2,861,111 + Xcc-8004.2937.1 0.43 +1.1
2,861,111 + Xcc-8004.2937.1 0.43 +0.0
2,861,111 + Xcc-8004.2937.1 0.43 +0.2
2,861,112 - Xcc-8004.2937.1 0.43 +0.7
2,861,183 + Xcc-8004.2937.1 0.54 -1.2
2,861,183 + Xcc-8004.2937.1 0.54 +0.9
2,861,183 + Xcc-8004.2937.1 0.54 +0.5
2,861,184 - Xcc-8004.2937.1 0.54 +0.5
2,861,184 - Xcc-8004.2937.1 0.54 +0.9
2,861,184 - Xcc-8004.2937.1 0.54 +1.7
2,861,184 - Xcc-8004.2937.1 0.54 -0.0
2,861,184 - Xcc-8004.2937.1 0.54 -0.2
2,861,184 - Xcc-8004.2937.1 0.54 +1.2
2,861,184 - Xcc-8004.2937.1 0.54 -2.1
2,861,216 + Xcc-8004.2937.1 0.59 -0.5
2,861,216 + Xcc-8004.2937.1 0.59 +0.1
2,861,216 + Xcc-8004.2937.1 0.59 +0.6
2,861,216 + Xcc-8004.2937.1 0.59 +1.6
2,861,216 + Xcc-8004.2937.1 0.59 +0.8
2,861,217 - Xcc-8004.2937.1 0.59 -1.8
2,861,217 - Xcc-8004.2937.1 0.59 -0.5
2,861,217 - Xcc-8004.2937.1 0.59 -1.3
2,861,245 + Xcc-8004.2937.1 0.64 -1.6
2,861,245 + Xcc-8004.2937.1 0.64 -1.3
2,861,245 + Xcc-8004.2937.1 0.64 -0.0
2,861,245 + Xcc-8004.2937.1 0.64 -0.9
2,861,246 - Xcc-8004.2937.1 0.64 -0.3
2,861,246 - Xcc-8004.2937.1 0.64 +0.5
2,861,354 + Xcc-8004.2937.1 0.80 +0.2
2,861,354 + Xcc-8004.2937.1 0.80 -0.8
2,861,355 - Xcc-8004.2937.1 0.80 -0.3
2,861,378 + Xcc-8004.2937.1 0.84 -2.0
2,861,378 + Xcc-8004.2937.1 0.84 -1.7
2,861,378 + Xcc-8004.2937.1 0.84 -0.1
2,861,378 + Xcc-8004.2937.1 0.84 -0.1
2,861,378 + Xcc-8004.2937.1 0.84 -1.4
2,861,378 + Xcc-8004.2937.1 0.84 +0.6
2,861,378 + Xcc-8004.2937.1 0.84 +1.2
2,861,378 + Xcc-8004.2937.1 0.84 -0.2
2,861,379 - Xcc-8004.2937.1 0.84 +1.5
2,861,379 - Xcc-8004.2937.1 0.84 +2.9
2,861,379 - Xcc-8004.2937.1 0.84 +0.2
2,861,480 + -0.7
2,862,050 + -1.9
2,862,781 + +0.6
2,862,781 + +2.3
2,862,781 + -0.6
2,862,781 + -2.3
2,862,782 - -0.2
2,862,782 - +2.1
2,862,782 - +1.5
2,862,916 + -0.4
2,862,916 + -0.1
2,862,916 + -1.4
2,862,916 + -0.3
2,862,916 + -0.0
2,862,917 - +0.6
2,862,917 - +0.3
2,862,917 - +0.2
2,862,917 - -1.4
2,862,959 + +2.6
2,863,011 - -1.3
2,863,058 + -0.1
2,863,058 + -1.7
2,863,058 + +0.1
2,863,058 + +0.5
2,863,058 + +0.6
2,863,059 - +0.2
2,863,059 - +1.1
2,863,059 - -1.4
2,863,062 + -0.7
2,863,062 + -0.7
2,863,062 + -0.9
2,863,062 + -2.0
2,863,062 + +0.6
2,863,062 + +2.6
2,863,063 - -1.4
2,863,063 - +1.4
2,863,105 + -0.3
2,863,106 + -3.6
2,863,106 + +1.2
2,863,106 + +0.3
2,863,107 - Xcc-8004.2940.1 0.10 -1.1
2,863,107 - Xcc-8004.2940.1 0.10 -2.1
2,863,107 - Xcc-8004.2940.1 0.10 -0.2
2,863,358 + Xcc-8004.2940.1 0.31 -2.3
2,863,358 + Xcc-8004.2940.1 0.31 -0.7
2,863,358 + Xcc-8004.2940.1 0.31 -1.2
2,863,358 + Xcc-8004.2940.1 0.31 +0.1
2,863,358 + Xcc-8004.2940.1 0.31 +0.0
2,863,359 - Xcc-8004.2940.1 0.31 -1.3
2,863,359 - Xcc-8004.2940.1 0.31 -0.2
2,863,359 - Xcc-8004.2940.1 0.31 -1.4
2,863,359 - Xcc-8004.2940.1 0.31 -0.2
2,863,359 - Xcc-8004.2940.1 0.31 -1.0
2,863,359 - Xcc-8004.2940.1 0.31 -0.9
2,863,359 - Xcc-8004.2940.1 0.31 -0.1
2,863,415 + Xcc-8004.2940.1 0.36 -0.3
2,863,506 - Xcc-8004.2940.1 0.43 +1.9
2,863,523 + Xcc-8004.2940.1 0.45 +0.5
2,863,523 + Xcc-8004.2940.1 0.45 +0.7
2,863,523 + Xcc-8004.2940.1 0.45 -2.9
2,863,524 - Xcc-8004.2940.1 0.45 -0.8
2,863,559 - Xcc-8004.2940.1 0.48 +1.2
2,863,631 + Xcc-8004.2940.1 0.54 -1.1
2,863,631 + Xcc-8004.2940.1 0.54 +0.7
2,863,631 + Xcc-8004.2940.1 0.54 -1.7
2,863,631 + Xcc-8004.2940.1 0.54 -0.0
2,863,631 + Xcc-8004.2940.1 0.54 -0.5
2,863,632 - Xcc-8004.2940.1 0.54 -1.1
2,863,632 - Xcc-8004.2940.1 0.54 -1.0
2,863,632 - Xcc-8004.2940.1 0.54 -0.1
2,863,632 - Xcc-8004.2940.1 0.54 +1.3
2,863,739 + Xcc-8004.2940.1 0.63 +0.4
2,863,740 - Xcc-8004.2940.1 0.63 +0.5

Or see this region's nucleotide sequence