Experiment: m.b. Dimethyl Sulfoxide 9 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_548 and HP15_549 are separated by 32 nucleotides HP15_549 and HP15_550 are separated by 45 nucleotides HP15_550 and HP15_551 overlap by 1 nucleotides HP15_551 and HP15_553 are separated by 24 nucleotides
HP15_548: HP15_548 - glutathione S-transferase, N-terminal domain protein, at 569,293 to 569,922
_548
HP15_549: HP15_549 - stringent starvation protein B, at 569,955 to 570,398
_549
HP15_550: HP15_550 - phosphoheptose isomerase, at 570,444 to 571,046
_550
HP15_551: HP15_551 - hypothetical protein, at 571,046 to 571,411
_551
HP15_553: HP15_553 - LppC family lipoprotein, at 571,436 to 573,097
_553
Position (kb) 570
571
572 Strain fitness (log2 ratio) -1
0
1 at 570.008 kb on - strand, within HP15_549 at 570.041 kb on - strand, within HP15_549 at 570.094 kb on - strand, within HP15_549 at 570.273 kb on + strand, within HP15_549 at 570.288 kb on - strand, within HP15_549 at 570.378 kb on + strand at 570.490 kb on - strand at 570.508 kb on + strand, within HP15_550 at 570.508 kb on + strand, within HP15_550 at 570.516 kb on - strand, within HP15_550 at 570.701 kb on - strand, within HP15_550 at 570.725 kb on - strand, within HP15_550 at 570.806 kb on + strand, within HP15_550 at 571.123 kb on - strand, within HP15_551 at 571.262 kb on + strand, within HP15_551 at 571.338 kb on - strand, within HP15_551 at 571.358 kb on + strand, within HP15_551 at 571.376 kb on - strand at 571.470 kb on + strand at 571.478 kb on - strand at 571.510 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 9 vol% remove 570,008 - HP15_549 0.12 +0.0 570,041 - HP15_549 0.19 -0.0 570,094 - HP15_549 0.31 -1.0 570,273 + HP15_549 0.72 +0.3 570,288 - HP15_549 0.75 +0.5 570,378 + +0.1 570,490 - +0.1 570,508 + HP15_550 0.11 +1.3 570,508 + HP15_550 0.11 +0.4 570,516 - HP15_550 0.12 -0.3 570,701 - HP15_550 0.43 +0.5 570,725 - HP15_550 0.47 +0.3 570,806 + HP15_550 0.60 -0.0 571,123 - HP15_551 0.21 +0.2 571,262 + HP15_551 0.59 -0.7 571,338 - HP15_551 0.80 +0.0 571,358 + HP15_551 0.85 +0.3 571,376 - -0.1 571,470 + -0.3 571,478 - +0.4 571,510 + -0.1
Or see this region's nucleotide sequence