Experiment: m.b. Gentamicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16770 and PGA1_c16780 are separated by 43 nucleotides PGA1_c16780 and PGA1_c16790 are separated by 4 nucleotides PGA1_c16790 and PGA1_c16800 are separated by 118 nucleotides PGA1_c16800 and PGA1_c16810 are separated by 167 nucleotides
PGA1_c16770: PGA1_c16770 - tRNA-Pro, at 1,751,945 to 1,752,021
_c16770
PGA1_c16780: PGA1_c16780 - Uncharacterized conserved protein, at 1,752,065 to 1,752,607
_c16780
PGA1_c16790: PGA1_c16790 - putative cold shock protein, at 1,752,612 to 1,753,148
_c16790
PGA1_c16800: PGA1_c16800 - pyridoxine/pyridoxamine 5'-phosphate oxidase PdxH, at 1,753,267 to 1,753,872
_c16800
PGA1_c16810: PGA1_c16810 - enoyl-[acyl-carrier-protein] reductase FabI, at 1,754,040 to 1,754,858
_c16810
Position (kb)
1752
1753
1754 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1751.666 kb on + strand at 1751.686 kb on + strand at 1751.686 kb on + strand at 1751.694 kb on - strand at 1751.745 kb on - strand at 1751.754 kb on + strand at 1751.759 kb on + strand at 1751.795 kb on + strand at 1751.802 kb on + strand at 1751.819 kb on - strand at 1751.834 kb on + strand at 1752.112 kb on + strand at 1752.120 kb on - strand, within PGA1_c16780 at 1752.120 kb on - strand, within PGA1_c16780 at 1752.120 kb on - strand, within PGA1_c16780 at 1752.120 kb on - strand, within PGA1_c16780 at 1752.250 kb on - strand, within PGA1_c16780 at 1752.265 kb on + strand, within PGA1_c16780 at 1752.290 kb on - strand, within PGA1_c16780 at 1752.334 kb on - strand, within PGA1_c16780 at 1752.533 kb on - strand, within PGA1_c16780 at 1752.630 kb on + strand at 1752.659 kb on + strand at 1752.728 kb on + strand, within PGA1_c16790 at 1752.736 kb on - strand, within PGA1_c16790 at 1752.795 kb on + strand, within PGA1_c16790 at 1752.803 kb on - strand, within PGA1_c16790 at 1752.810 kb on - strand, within PGA1_c16790 at 1752.828 kb on - strand, within PGA1_c16790 at 1753.012 kb on + strand, within PGA1_c16790 at 1753.067 kb on + strand, within PGA1_c16790 at 1753.080 kb on + strand, within PGA1_c16790 at 1753.081 kb on + strand, within PGA1_c16790 at 1753.099 kb on - strand at 1753.158 kb on - strand at 1753.890 kb on + strand at 1753.934 kb on - strand at 1753.934 kb on - strand at 1753.934 kb on - strand at 1753.973 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.002 mg/ml remove 1,751,666 + +1.1 1,751,686 + -0.7 1,751,686 + -0.2 1,751,694 - +0.2 1,751,745 - +0.5 1,751,754 + +0.5 1,751,759 + +0.1 1,751,795 + -0.3 1,751,802 + -0.7 1,751,819 - -0.6 1,751,834 + +0.7 1,752,112 + +1.4 1,752,120 - PGA1_c16780 0.10 -0.5 1,752,120 - PGA1_c16780 0.10 +0.1 1,752,120 - PGA1_c16780 0.10 +0.2 1,752,120 - PGA1_c16780 0.10 -0.6 1,752,250 - PGA1_c16780 0.34 -0.6 1,752,265 + PGA1_c16780 0.37 +0.2 1,752,290 - PGA1_c16780 0.41 +0.3 1,752,334 - PGA1_c16780 0.50 +0.2 1,752,533 - PGA1_c16780 0.86 +0.5 1,752,630 + -0.4 1,752,659 + -0.1 1,752,728 + PGA1_c16790 0.22 +0.7 1,752,736 - PGA1_c16790 0.23 -1.1 1,752,795 + PGA1_c16790 0.34 -0.9 1,752,803 - PGA1_c16790 0.36 -0.3 1,752,810 - PGA1_c16790 0.37 -0.7 1,752,828 - PGA1_c16790 0.40 +0.3 1,753,012 + PGA1_c16790 0.74 -2.0 1,753,067 + PGA1_c16790 0.85 -2.8 1,753,080 + PGA1_c16790 0.87 -2.1 1,753,081 + PGA1_c16790 0.87 -0.8 1,753,099 - -1.3 1,753,158 - -1.4 1,753,890 + -0.8 1,753,934 - +0.1 1,753,934 - -0.4 1,753,934 - +1.0 1,753,973 + -0.3
Or see this region's nucleotide sequence