Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU_tRNA-Lys-1

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0236 and tRNA-Lys are separated by 106 nucleotidestRNA-Lys and serS are separated by 58 nucleotides DVU0236: DVU0236 - site-specific recombinase, phage integrase family (TIGR), at 269,283 to 270,425 DVU0236 DVU_tRNA-Lys-1: tRNA-Lys - tRNA with anticodon TTT for Lys (VIMSS-AUTO), at 270,532 to 270,607 tRNA-Lys DVU0237: serS - seryl-tRNA synthetase (TIGR), at 270,666 to 271,940 serS Position (kb) 270 271Strain fitness (log2 ratio) -2 -1 0 1 2at 269.551 kb on + strand, within DVU0236at 269.575 kb on + strand, within DVU0236at 269.583 kb on + strand, within DVU0236at 269.591 kb on - strand, within DVU0236at 269.591 kb on - strand, within DVU0236at 269.605 kb on + strand, within DVU0236at 269.613 kb on - strand, within DVU0236at 269.644 kb on + strand, within DVU0236at 269.708 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on - strand, within DVU0236at 269.710 kb on - strand, within DVU0236at 269.717 kb on - strand, within DVU0236at 269.717 kb on - strand, within DVU0236at 269.731 kb on - strand, within DVU0236at 269.742 kb on + strand, within DVU0236at 269.750 kb on - strand, within DVU0236at 269.792 kb on - strand, within DVU0236at 269.794 kb on - strand, within DVU0236at 269.796 kb on + strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.922 kb on - strand, within DVU0236at 269.922 kb on - strand, within DVU0236at 269.925 kb on - strand, within DVU0236at 269.925 kb on - strand, within DVU0236at 269.943 kb on + strand, within DVU0236at 269.957 kb on + strand, within DVU0236at 270.013 kb on + strand, within DVU0236at 270.057 kb on - strand, within DVU0236at 270.062 kb on - strand, within DVU0236at 270.118 kb on + strand, within DVU0236at 270.120 kb on + strand, within DVU0236at 270.130 kb on + strand, within DVU0236at 270.138 kb on - strand, within DVU0236at 270.164 kb on + strand, within DVU0236at 270.180 kb on - strand, within DVU0236at 270.187 kb on - strand, within DVU0236at 270.203 kb on - strand, within DVU0236at 270.232 kb on + strand, within DVU0236at 270.294 kb on + strand, within DVU0236at 270.386 kb on - strandat 270.393 kb on - strandat 270.393 kb on - strandat 270.422 kb on - strandat 270.652 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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269,551 + DVU0236 0.23 -0.9
269,575 + DVU0236 0.26 -0.6
269,583 + DVU0236 0.26 +1.7
269,591 - DVU0236 0.27 -0.3
269,591 - DVU0236 0.27 -0.3
269,605 + DVU0236 0.28 -0.1
269,613 - DVU0236 0.29 -0.4
269,644 + DVU0236 0.32 -0.6
269,708 + DVU0236 0.37 -0.2
269,709 + DVU0236 0.37 +2.7
269,709 + DVU0236 0.37 +0.6
269,709 + DVU0236 0.37 -0.8
269,709 + DVU0236 0.37 -0.1
269,709 - DVU0236 0.37 -0.4
269,710 - DVU0236 0.37 +0.0
269,717 - DVU0236 0.38 -0.4
269,717 - DVU0236 0.38 -0.1
269,731 - DVU0236 0.39 -0.9
269,742 + DVU0236 0.40 +1.6
269,750 - DVU0236 0.41 -0.5
269,792 - DVU0236 0.45 +0.4
269,794 - DVU0236 0.45 -0.3
269,796 + DVU0236 0.45 -1.3
269,826 - DVU0236 0.48 +1.2
269,826 - DVU0236 0.48 +1.4
269,826 - DVU0236 0.48 +0.4
269,922 - DVU0236 0.56 -0.7
269,922 - DVU0236 0.56 -1.6
269,925 - DVU0236 0.56 -0.4
269,925 - DVU0236 0.56 +0.2
269,943 + DVU0236 0.58 +0.1
269,957 + DVU0236 0.59 -0.6
270,013 + DVU0236 0.64 -0.2
270,057 - DVU0236 0.68 +0.6
270,062 - DVU0236 0.68 -1.8
270,118 + DVU0236 0.73 -0.2
270,120 + DVU0236 0.73 -0.5
270,130 + DVU0236 0.74 -0.1
270,138 - DVU0236 0.75 -1.3
270,164 + DVU0236 0.77 -1.3
270,180 - DVU0236 0.78 -0.2
270,187 - DVU0236 0.79 -0.3
270,203 - DVU0236 0.80 -0.8
270,232 + DVU0236 0.83 -1.2
270,294 + DVU0236 0.88 +0.5
270,386 - +0.2
270,393 - -0.8
270,393 - +1.2
270,422 - +0.2
270,652 + +1.0

Or see this region's nucleotide sequence