Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0474 and DVU0475 are separated by 105 nucleotides DVU0475 and icd are separated by 329 nucleotides icd and DVU0478 are separated by 98 nucleotides
DVU0474: DVU0474 - ISDvu4, transposase (TIGR), at 540,442 to 541,491
DVU0474
DVU0475: DVU0475 - membrane protein, putative, truncation (TIGR), at 541,597 to 542,037
DVU0475
DVU0477: icd - isocitrate dehydrogenase, NADP-dependent (TIGR), at 542,367 to 543,509
icd
DVU0478: DVU0478 - Ser/Thr protein phosphatase family (TIGR), at 543,608 to 544,471
DVU0478
Position (kb) 542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 541.600 kb on + strand at 541.751 kb on - strand, within DVU0475 at 541.847 kb on + strand, within DVU0475 at 541.855 kb on - strand, within DVU0475 at 541.964 kb on + strand, within DVU0475 at 542.034 kb on - strand at 542.151 kb on - strand at 542.223 kb on + strand at 542.332 kb on + strand at 542.340 kb on - strand at 542.356 kb on + strand at 543.514 kb on - strand at 543.514 kb on - strand at 543.514 kb on - strand at 543.639 kb on - strand at 543.693 kb on - strand at 543.746 kb on + strand, within DVU0478 at 543.768 kb on - strand, within DVU0478 at 543.816 kb on + strand, within DVU0478 at 544.065 kb on + strand, within DVU0478 at 544.073 kb on - strand, within DVU0478 at 544.112 kb on - strand, within DVU0478 at 544.220 kb on + strand, within DVU0478 at 544.220 kb on + strand, within DVU0478 at 544.221 kb on + strand, within DVU0478 at 544.228 kb on - strand, within DVU0478 at 544.234 kb on - strand, within DVU0478 at 544.239 kb on - strand, within DVU0478 at 544.256 kb on + strand, within DVU0478 at 544.374 kb on + strand, within DVU0478 at 544.382 kb on - strand, within DVU0478 at 544.382 kb on - strand, within DVU0478 at 544.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 541,600 + -0.5 541,751 - DVU0475 0.35 -0.9 541,847 + DVU0475 0.57 -0.3 541,855 - DVU0475 0.59 +0.3 541,964 + DVU0475 0.83 -0.3 542,034 - +0.1 542,151 - +0.5 542,223 + +0.2 542,332 + -0.7 542,340 - -1.4 542,356 + -2.2 543,514 - -0.3 543,514 - -1.0 543,514 - -0.2 543,639 - -0.1 543,693 - -0.7 543,746 + DVU0478 0.16 +3.5 543,768 - DVU0478 0.19 -0.6 543,816 + DVU0478 0.24 -0.2 544,065 + DVU0478 0.53 +0.5 544,073 - DVU0478 0.54 -0.8 544,112 - DVU0478 0.58 -0.3 544,220 + DVU0478 0.71 +0.8 544,220 + DVU0478 0.71 +1.2 544,221 + DVU0478 0.71 -0.8 544,228 - DVU0478 0.72 -0.0 544,234 - DVU0478 0.72 +0.2 544,239 - DVU0478 0.73 -0.3 544,256 + DVU0478 0.75 -0.4 544,374 + DVU0478 0.89 -0.9 544,382 - DVU0478 0.90 -0.1 544,382 - DVU0478 0.90 +1.8 544,455 + -0.8
Or see this region's nucleotide sequence