Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0394

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntung and DVU0394 are separated by 239 nucleotidesDVU0394 and hit are separated by 227 nucleotideshit and hup-1 are separated by 27 nucleotides DVU0393: ung - uracil-DNA glycosylase (TIGR), at 441,764 to 442,501 ung DVU0394: DVU0394 - radical SAM domain protein (TIGR), at 442,741 to 443,763 DVU0394 DVU0395: hit - HIT family protein (TIGR), at 443,991 to 444,410 hit DVU0396: hup-1 - DNA-binding protein HU (TIGR), at 444,438 to 444,725 hup-1 Position (kb) 442 443 444Strain fitness (log2 ratio) -1 0 1at 441.877 kb on + strand, within ungat 441.898 kb on + strand, within ungat 441.903 kb on + strand, within ungat 441.941 kb on - strand, within ungat 441.955 kb on - strand, within ungat 441.985 kb on - strand, within ungat 441.985 kb on - strand, within ungat 442.073 kb on - strand, within ungat 442.159 kb on + strand, within ungat 442.164 kb on + strand, within ungat 442.202 kb on - strand, within ungat 442.229 kb on - strand, within ungat 442.238 kb on + strand, within ungat 442.245 kb on + strand, within ungat 442.285 kb on + strand, within ungat 442.313 kb on - strand, within ungat 442.364 kb on - strand, within ungat 442.378 kb on - strand, within ungat 442.394 kb on + strand, within ungat 442.401 kb on + strand, within ungat 442.453 kb on + strandat 442.547 kb on + strandat 442.629 kb on + strandat 442.629 kb on + strandat 442.631 kb on + strandat 442.631 kb on + strandat 442.637 kb on - strandat 442.723 kb on - strandat 442.725 kb on + strandat 443.812 kb on - strandat 444.050 kb on + strand, within hitat 444.050 kb on + strand, within hitat 444.053 kb on - strand, within hitat 444.058 kb on - strand, within hitat 444.176 kb on + strand, within hitat 444.234 kb on + strand, within hitat 444.242 kb on - strand, within hitat 444.242 kb on - strand, within hitat 444.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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441,877 + ung DVU0393 0.15 -0.6
441,898 + ung DVU0393 0.18 -0.3
441,903 + ung DVU0393 0.19 +0.8
441,941 - ung DVU0393 0.24 -0.2
441,955 - ung DVU0393 0.26 -0.7
441,985 - ung DVU0393 0.30 -0.3
441,985 - ung DVU0393 0.30 +0.4
442,073 - ung DVU0393 0.42 -0.4
442,159 + ung DVU0393 0.54 -0.2
442,164 + ung DVU0393 0.54 +1.1
442,202 - ung DVU0393 0.59 -0.7
442,229 - ung DVU0393 0.63 +0.1
442,238 + ung DVU0393 0.64 -0.0
442,245 + ung DVU0393 0.65 -0.0
442,285 + ung DVU0393 0.71 +0.4
442,313 - ung DVU0393 0.74 -0.0
442,364 - ung DVU0393 0.81 +0.7
442,378 - ung DVU0393 0.83 -0.7
442,394 + ung DVU0393 0.85 -0.5
442,401 + ung DVU0393 0.86 -0.8
442,453 + -1.0
442,547 + +0.2
442,629 + -0.3
442,629 + +0.8
442,631 + -0.1
442,631 + -0.4
442,637 - +0.0
442,723 - +0.4
442,725 + +0.8
443,812 - -0.0
444,050 + hit DVU0395 0.14 -1.5
444,050 + hit DVU0395 0.14 +0.5
444,053 - hit DVU0395 0.15 -1.5
444,058 - hit DVU0395 0.16 -0.9
444,176 + hit DVU0395 0.44 -1.1
444,234 + hit DVU0395 0.58 -1.0
444,242 - hit DVU0395 0.60 -0.5
444,242 - hit DVU0395 0.60 +0.3
444,394 - -0.4

Or see this region's nucleotide sequence