Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0094

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0093 and DVU0094 are separated by 231 nucleotidesDVU0094 and potD-1 are separated by 140 nucleotides DVU0093: DVU0093 - conserved domain protein/glycosyl transferase, group 1 family protein (TIGR), at 120,692 to 123,142 DVU0093 DVU0094: DVU0094 - methyl-accepting chemotaxis protein (TIGR), at 123,374 to 125,536 DVU0094 DVU0095: potD-1 - polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR), at 125,677 to 126,714 potD-1 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 122.399 kb on - strand, within DVU0093at 122.408 kb on + strand, within DVU0093at 122.416 kb on - strand, within DVU0093at 122.418 kb on + strand, within DVU0093at 122.436 kb on + strand, within DVU0093at 122.469 kb on + strand, within DVU0093at 122.483 kb on + strand, within DVU0093at 122.500 kb on - strand, within DVU0093at 122.528 kb on + strand, within DVU0093at 122.538 kb on + strand, within DVU0093at 122.546 kb on - strand, within DVU0093at 122.558 kb on + strand, within DVU0093at 122.558 kb on + strand, within DVU0093at 122.566 kb on - strand, within DVU0093at 122.566 kb on - strand, within DVU0093at 122.575 kb on + strand, within DVU0093at 122.644 kb on + strand, within DVU0093at 122.652 kb on - strand, within DVU0093at 122.689 kb on + strand, within DVU0093at 122.696 kb on - strand, within DVU0093at 122.765 kb on + strand, within DVU0093at 122.773 kb on - strand, within DVU0093at 122.773 kb on - strand, within DVU0093at 122.773 kb on - strand, within DVU0093at 122.791 kb on - strand, within DVU0093at 122.811 kb on + strand, within DVU0093at 122.812 kb on - strand, within DVU0093at 122.848 kb on + strand, within DVU0093at 122.853 kb on + strand, within DVU0093at 122.937 kb on - strandat 123.017 kb on + strandat 123.025 kb on - strandat 123.056 kb on + strandat 123.129 kb on - strandat 123.143 kb on + strandat 123.265 kb on - strandat 123.367 kb on + strandat 123.367 kb on + strandat 123.375 kb on - strandat 123.420 kb on + strandat 123.468 kb on + strandat 123.470 kb on + strandat 123.504 kb on + strandat 123.522 kb on + strandat 123.543 kb on + strandat 123.543 kb on + strandat 123.573 kb on + strandat 123.576 kb on - strandat 123.671 kb on + strand, within DVU0094at 123.722 kb on + strand, within DVU0094at 123.786 kb on + strand, within DVU0094at 123.796 kb on + strand, within DVU0094at 123.835 kb on + strand, within DVU0094at 123.968 kb on + strand, within DVU0094at 123.968 kb on + strand, within DVU0094at 123.975 kb on + strand, within DVU0094at 124.156 kb on + strand, within DVU0094at 124.162 kb on + strand, within DVU0094at 124.213 kb on - strand, within DVU0094at 124.291 kb on - strand, within DVU0094at 124.292 kb on - strand, within DVU0094at 124.309 kb on + strand, within DVU0094at 124.316 kb on - strand, within DVU0094at 124.326 kb on - strand, within DVU0094at 124.340 kb on + strand, within DVU0094at 124.361 kb on - strand, within DVU0094at 124.396 kb on + strand, within DVU0094at 124.436 kb on - strand, within DVU0094at 124.463 kb on + strand, within DVU0094at 124.468 kb on + strand, within DVU0094at 124.471 kb on - strand, within DVU0094at 124.495 kb on + strand, within DVU0094at 124.554 kb on + strand, within DVU0094at 124.583 kb on + strand, within DVU0094at 124.682 kb on + strand, within DVU0094at 124.690 kb on - strand, within DVU0094at 124.744 kb on - strand, within DVU0094at 124.758 kb on + strand, within DVU0094at 124.935 kb on + strand, within DVU0094at 124.939 kb on - strand, within DVU0094at 124.955 kb on + strand, within DVU0094at 124.963 kb on - strand, within DVU0094at 124.974 kb on - strand, within DVU0094at 125.202 kb on + strand, within DVU0094at 125.202 kb on + strand, within DVU0094at 125.210 kb on - strand, within DVU0094at 125.220 kb on - strand, within DVU0094at 125.227 kb on - strand, within DVU0094at 125.229 kb on + strand, within DVU0094at 125.229 kb on + strand, within DVU0094at 125.271 kb on - strand, within DVU0094at 125.289 kb on + strand, within DVU0094at 125.297 kb on - strand, within DVU0094at 125.297 kb on - strand, within DVU0094at 125.297 kb on - strand, within DVU0094at 125.345 kb on - strandat 125.345 kb on - strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.531 kb on + strandat 125.539 kb on - strandat 125.539 kb on - strandat 125.539 kb on - strandat 125.539 kb on - strandat 125.689 kb on + strandat 125.697 kb on - strandat 125.707 kb on - strandat 125.869 kb on - strand, within potD-1at 125.905 kb on + strand, within potD-1at 126.005 kb on - strand, within potD-1at 126.050 kb on + strand, within potD-1at 126.058 kb on - strand, within potD-1at 126.068 kb on + strand, within potD-1at 126.236 kb on + strand, within potD-1at 126.239 kb on - strand, within potD-1at 126.242 kb on + strand, within potD-1at 126.244 kb on - strand, within potD-1at 126.292 kb on + strand, within potD-1at 126.300 kb on - strand, within potD-1at 126.315 kb on - strand, within potD-1at 126.326 kb on - strand, within potD-1at 126.342 kb on - strand, within potD-1at 126.378 kb on - strand, within potD-1at 126.390 kb on + strand, within potD-1at 126.414 kb on + strand, within potD-1at 126.490 kb on + strand, within potD-1

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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122,399 - DVU0093 0.70 +0.8
122,408 + DVU0093 0.70 -0.3
122,416 - DVU0093 0.70 -0.0
122,418 + DVU0093 0.70 -0.3
122,436 + DVU0093 0.71 -0.3
122,469 + DVU0093 0.73 +0.3
122,483 + DVU0093 0.73 -0.5
122,500 - DVU0093 0.74 +1.1
122,528 + DVU0093 0.75 -0.2
122,538 + DVU0093 0.75 +0.3
122,546 - DVU0093 0.76 +1.4
122,558 + DVU0093 0.76 -0.5
122,558 + DVU0093 0.76 -0.6
122,566 - DVU0093 0.76 -0.6
122,566 - DVU0093 0.76 +0.0
122,575 + DVU0093 0.77 +0.8
122,644 + DVU0093 0.80 +0.1
122,652 - DVU0093 0.80 -0.9
122,689 + DVU0093 0.81 +1.1
122,696 - DVU0093 0.82 -0.2
122,765 + DVU0093 0.85 -1.0
122,773 - DVU0093 0.85 +0.0
122,773 - DVU0093 0.85 +0.3
122,773 - DVU0093 0.85 -0.3
122,791 - DVU0093 0.86 +0.9
122,811 + DVU0093 0.86 +1.4
122,812 - DVU0093 0.86 -0.3
122,848 + DVU0093 0.88 -1.4
122,853 + DVU0093 0.88 -1.3
122,937 - -2.1
123,017 + -0.5
123,025 - +1.7
123,056 + -0.6
123,129 - +0.3
123,143 + +1.0
123,265 - -0.3
123,367 + +0.9
123,367 + +0.5
123,375 - +1.7
123,420 + +0.5
123,468 + +0.8
123,470 + +1.9
123,504 + +0.3
123,522 + +0.9
123,543 + -0.4
123,543 + -0.2
123,573 + -1.0
123,576 - -0.4
123,671 + DVU0094 0.14 -0.2
123,722 + DVU0094 0.16 +0.4
123,786 + DVU0094 0.19 -0.3
123,796 + DVU0094 0.20 +0.9
123,835 + DVU0094 0.21 +1.3
123,968 + DVU0094 0.27 +0.7
123,968 + DVU0094 0.27 -1.0
123,975 + DVU0094 0.28 -0.0
124,156 + DVU0094 0.36 -1.2
124,162 + DVU0094 0.36 -0.1
124,213 - DVU0094 0.39 -2.8
124,291 - DVU0094 0.42 +0.3
124,292 - DVU0094 0.42 -0.1
124,309 + DVU0094 0.43 +0.1
124,316 - DVU0094 0.44 +0.9
124,326 - DVU0094 0.44 -0.1
124,340 + DVU0094 0.45 -0.5
124,361 - DVU0094 0.46 -0.0
124,396 + DVU0094 0.47 -0.7
124,436 - DVU0094 0.49 +0.3
124,463 + DVU0094 0.50 +2.3
124,468 + DVU0094 0.51 +0.1
124,471 - DVU0094 0.51 -0.1
124,495 + DVU0094 0.52 -0.8
124,554 + DVU0094 0.55 -0.0
124,583 + DVU0094 0.56 -0.3
124,682 + DVU0094 0.60 +1.4
124,690 - DVU0094 0.61 +0.9
124,744 - DVU0094 0.63 +0.3
124,758 + DVU0094 0.64 -0.5
124,935 + DVU0094 0.72 +0.5
124,939 - DVU0094 0.72 -0.3
124,955 + DVU0094 0.73 +0.1
124,963 - DVU0094 0.73 +1.9
124,974 - DVU0094 0.74 +0.4
125,202 + DVU0094 0.85 +0.0
125,202 + DVU0094 0.85 +3.1
125,210 - DVU0094 0.85 +0.8
125,220 - DVU0094 0.85 +0.8
125,227 - DVU0094 0.86 -1.0
125,229 + DVU0094 0.86 -0.2
125,229 + DVU0094 0.86 -0.0
125,271 - DVU0094 0.88 -0.2
125,289 + DVU0094 0.89 -0.3
125,297 - DVU0094 0.89 -0.9
125,297 - DVU0094 0.89 +1.3
125,297 - DVU0094 0.89 -1.1
125,345 - -0.6
125,345 - +0.4
125,531 + -0.3
125,531 + -0.3
125,531 + +0.5
125,531 + -0.5
125,531 + -0.2
125,531 + +1.8
125,539 - -1.2
125,539 - +0.7
125,539 - -0.2
125,539 - -0.1
125,689 + -0.3
125,697 - -0.2
125,707 - -1.6
125,869 - potD-1 DVU0095 0.18 -0.0
125,905 + potD-1 DVU0095 0.22 -0.3
126,005 - potD-1 DVU0095 0.32 +3.7
126,050 + potD-1 DVU0095 0.36 -0.5
126,058 - potD-1 DVU0095 0.37 +1.7
126,068 + potD-1 DVU0095 0.38 +1.9
126,236 + potD-1 DVU0095 0.54 -1.5
126,239 - potD-1 DVU0095 0.54 +0.1
126,242 + potD-1 DVU0095 0.54 -0.2
126,244 - potD-1 DVU0095 0.55 +0.2
126,292 + potD-1 DVU0095 0.59 -0.1
126,300 - potD-1 DVU0095 0.60 -0.5
126,315 - potD-1 DVU0095 0.61 +0.8
126,326 - potD-1 DVU0095 0.63 +1.7
126,342 - potD-1 DVU0095 0.64 -0.1
126,378 - potD-1 DVU0095 0.68 +0.8
126,390 + potD-1 DVU0095 0.69 -0.8
126,414 + potD-1 DVU0095 0.71 +0.5
126,490 + potD-1 DVU0095 0.78 -0.3

Or see this region's nucleotide sequence