Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2655

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2652 and dacA are separated by 956 nucleotidesdacA and DVU2657 are separated by 357 nucleotidesDVU2657 and DVU2658 are separated by 262 nucleotides DVU2652: DVU2652 - hypothetical protein (TIGR), at 2,766,824 to 2,767,405 DVU2652 DVU2655: dacA - D-alanyl-D-alanine carboxypeptidase family protein (TIGR), at 2,768,362 to 2,769,687 dacA DVU2657: DVU2657 - 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR), at 2,770,045 to 2,770,407 DVU2657 DVU2658: DVU2658 - conserved hypothetical protein (TIGR), at 2,770,670 to 2,771,320 DVU2658 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2767.373 kb on + strandat 2767.373 kb on + strandat 2767.381 kb on - strandat 2767.438 kb on - strandat 2767.488 kb on + strandat 2767.488 kb on + strandat 2767.496 kb on - strandat 2767.496 kb on - strandat 2767.681 kb on - strandat 2767.720 kb on + strandat 2767.734 kb on - strandat 2767.741 kb on - strandat 2767.762 kb on + strandat 2767.770 kb on - strandat 2767.788 kb on + strandat 2767.788 kb on + strandat 2767.834 kb on + strandat 2767.837 kb on - strandat 2767.845 kb on - strandat 2767.876 kb on - strandat 2767.934 kb on - strandat 2767.963 kb on + strandat 2767.965 kb on + strandat 2767.999 kb on - strandat 2768.012 kb on - strandat 2768.146 kb on + strandat 2768.204 kb on - strandat 2768.212 kb on - strandat 2768.212 kb on - strandat 2768.312 kb on + strandat 2768.331 kb on - strandat 2768.350 kb on - strandat 2768.378 kb on + strandat 2768.386 kb on - strandat 2768.553 kb on + strand, within dacAat 2768.607 kb on + strand, within dacAat 2768.792 kb on + strand, within dacAat 2768.820 kb on + strand, within dacAat 2768.865 kb on + strand, within dacAat 2768.954 kb on - strand, within dacAat 2768.956 kb on - strand, within dacAat 2768.996 kb on - strand, within dacAat 2769.030 kb on + strand, within dacAat 2769.055 kb on - strand, within dacAat 2769.092 kb on - strand, within dacAat 2769.113 kb on - strand, within dacAat 2769.113 kb on - strand, within dacAat 2769.340 kb on + strand, within dacAat 2769.355 kb on + strand, within dacAat 2769.380 kb on + strand, within dacAat 2769.388 kb on - strand, within dacAat 2769.411 kb on + strand, within dacAat 2769.464 kb on - strand, within dacAat 2769.507 kb on + strand, within dacAat 2769.569 kb on - strandat 2769.647 kb on - strandat 2769.655 kb on - strandat 2769.655 kb on - strandat 2769.747 kb on + strandat 2769.783 kb on - strandat 2769.809 kb on - strandat 2769.874 kb on - strandat 2769.899 kb on - strandat 2769.899 kb on - strandat 2769.931 kb on - strandat 2770.071 kb on + strandat 2770.124 kb on + strand, within DVU2657at 2770.171 kb on - strand, within DVU2657at 2770.190 kb on - strand, within DVU2657at 2770.420 kb on - strandat 2770.495 kb on - strandat 2770.525 kb on + strandat 2770.531 kb on + strandat 2770.608 kb on - strandat 2770.628 kb on - strandat 2770.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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2,767,373 + -0.3
2,767,373 + -0.4
2,767,381 - -0.9
2,767,438 - +0.9
2,767,488 + +1.0
2,767,488 + +0.8
2,767,496 - -0.7
2,767,496 - +0.6
2,767,681 - +0.0
2,767,720 + -2.3
2,767,734 - +0.2
2,767,741 - +2.8
2,767,762 + -1.1
2,767,770 - -0.5
2,767,788 + -0.2
2,767,788 + +1.8
2,767,834 + -0.4
2,767,837 - -0.2
2,767,845 - +0.3
2,767,876 - -0.2
2,767,934 - +0.0
2,767,963 + -0.2
2,767,965 + -0.2
2,767,999 - +1.2
2,768,012 - -0.5
2,768,146 + -0.2
2,768,204 - -0.8
2,768,212 - -0.9
2,768,212 - -0.1
2,768,312 + +0.4
2,768,331 - +1.0
2,768,350 - -0.0
2,768,378 + +0.1
2,768,386 - +0.5
2,768,553 + dacA DVU2655 0.14 -1.1
2,768,607 + dacA DVU2655 0.18 +0.1
2,768,792 + dacA DVU2655 0.32 -0.1
2,768,820 + dacA DVU2655 0.35 -1.2
2,768,865 + dacA DVU2655 0.38 -0.1
2,768,954 - dacA DVU2655 0.45 +1.6
2,768,956 - dacA DVU2655 0.45 +0.5
2,768,996 - dacA DVU2655 0.48 -0.0
2,769,030 + dacA DVU2655 0.50 -1.0
2,769,055 - dacA DVU2655 0.52 -0.8
2,769,092 - dacA DVU2655 0.55 +1.0
2,769,113 - dacA DVU2655 0.57 -0.7
2,769,113 - dacA DVU2655 0.57 -0.7
2,769,340 + dacA DVU2655 0.74 -0.5
2,769,355 + dacA DVU2655 0.75 -0.0
2,769,380 + dacA DVU2655 0.77 -1.5
2,769,388 - dacA DVU2655 0.77 +0.7
2,769,411 + dacA DVU2655 0.79 -0.8
2,769,464 - dacA DVU2655 0.83 +0.6
2,769,507 + dacA DVU2655 0.86 +0.0
2,769,569 - -0.3
2,769,647 - +0.2
2,769,655 - +1.2
2,769,655 - -1.2
2,769,747 + +0.3
2,769,783 - +0.5
2,769,809 - -0.1
2,769,874 - +0.1
2,769,899 - -0.4
2,769,899 - -0.6
2,769,931 - +0.8
2,770,071 + +1.8
2,770,124 + DVU2657 0.22 -0.4
2,770,171 - DVU2657 0.35 -1.4
2,770,190 - DVU2657 0.40 -3.0
2,770,420 - -1.0
2,770,495 - +0.3
2,770,525 + -0.1
2,770,531 + +0.6
2,770,608 - -0.3
2,770,628 - +0.9
2,770,642 - -0.4

Or see this region's nucleotide sequence