Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1990

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuvrA and DVU1988 are separated by 107 nucleotidesDVU1988 and DVU1990 are separated by 176 nucleotidesDVU1990 and tRNA-Leu are separated by 65 nucleotidestRNA-Leu and DVU1991 are separated by 444 nucleotides DVU1987: uvrA - excinuclease ABC, A subunit (TIGR), at 2,065,139 to 2,068,009 uvrA DVU1988: DVU1988 - membrane protein, putative (TIGR), at 2,068,117 to 2,068,803 DVU1988 DVU1990: DVU1990 - hypothetical protein (TIGR), at 2,068,980 to 2,069,627 DVU1990 DVU_tRNA-Leu-5: tRNA-Leu - tRNA with anticodon CAA for Leu (VIMSS-AUTO), at 2,069,693 to 2,069,779 tRNA-Leu DVU1991: DVU1991 - hypothetical protein (TIGR), at 2,070,224 to 2,071,219 DVU1991 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -2 -1 0 1 2at 2068.100 kb on - strandat 2068.132 kb on + strandat 2068.140 kb on - strandat 2068.145 kb on + strandat 2068.145 kb on + strandat 2068.158 kb on - strandat 2068.257 kb on + strand, within DVU1988at 2068.268 kb on + strand, within DVU1988at 2068.268 kb on + strand, within DVU1988at 2068.366 kb on - strand, within DVU1988at 2068.391 kb on + strand, within DVU1988at 2068.407 kb on + strand, within DVU1988at 2068.474 kb on + strand, within DVU1988at 2068.482 kb on - strand, within DVU1988at 2068.487 kb on + strand, within DVU1988at 2068.487 kb on + strand, within DVU1988at 2068.735 kb on + strandat 2068.780 kb on - strandat 2068.892 kb on + strandat 2068.892 kb on + strandat 2068.900 kb on - strandat 2068.962 kb on + strandat 2068.970 kb on - strandat 2068.978 kb on - strandat 2068.997 kb on + strandat 2069.050 kb on + strand, within DVU1990at 2069.159 kb on - strand, within DVU1990at 2069.200 kb on + strand, within DVU1990at 2069.208 kb on - strand, within DVU1990at 2069.270 kb on + strand, within DVU1990at 2069.289 kb on + strand, within DVU1990at 2069.291 kb on + strand, within DVU1990at 2069.315 kb on - strand, within DVU1990at 2069.400 kb on - strand, within DVU1990at 2069.402 kb on + strand, within DVU1990at 2069.422 kb on + strand, within DVU1990at 2069.422 kb on + strand, within DVU1990at 2069.441 kb on + strand, within DVU1990at 2069.488 kb on - strand, within DVU1990at 2069.490 kb on + strand, within DVU1990at 2069.515 kb on - strand, within DVU1990at 2069.519 kb on + strand, within DVU1990at 2069.594 kb on + strandat 2069.614 kb on - strandat 2069.624 kb on - strandat 2069.633 kb on + strandat 2069.646 kb on - strandat 2069.669 kb on + strandat 2069.872 kb on - strandat 2069.878 kb on - strandat 2070.008 kb on + strandat 2070.071 kb on - strandat 2070.142 kb on + strandat 2070.142 kb on + strandat 2070.212 kb on - strandat 2070.212 kb on - strandat 2070.229 kb on - strandat 2070.343 kb on + strand, within DVU1991at 2070.387 kb on + strand, within DVU1991at 2070.588 kb on + strand, within DVU1991at 2070.611 kb on + strand, within DVU1991

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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2,068,100 - +0.5
2,068,132 + +0.0
2,068,140 - -0.5
2,068,145 + +0.1
2,068,145 + +0.8
2,068,158 - -0.2
2,068,257 + DVU1988 0.20 -1.2
2,068,268 + DVU1988 0.22 +1.2
2,068,268 + DVU1988 0.22 -0.1
2,068,366 - DVU1988 0.36 +0.2
2,068,391 + DVU1988 0.40 -0.2
2,068,407 + DVU1988 0.42 -0.1
2,068,474 + DVU1988 0.52 -1.1
2,068,482 - DVU1988 0.53 -0.2
2,068,487 + DVU1988 0.54 -0.6
2,068,487 + DVU1988 0.54 -0.9
2,068,735 + +0.9
2,068,780 - -0.9
2,068,892 + +0.7
2,068,892 + -0.2
2,068,900 - -0.4
2,068,962 + -0.4
2,068,970 - +0.1
2,068,978 - +0.8
2,068,997 + +0.1
2,069,050 + DVU1990 0.11 +1.8
2,069,159 - DVU1990 0.28 +0.3
2,069,200 + DVU1990 0.34 +0.5
2,069,208 - DVU1990 0.35 +0.2
2,069,270 + DVU1990 0.45 +0.8
2,069,289 + DVU1990 0.48 +1.6
2,069,291 + DVU1990 0.48 +1.3
2,069,315 - DVU1990 0.52 -0.8
2,069,400 - DVU1990 0.65 -1.0
2,069,402 + DVU1990 0.65 +0.7
2,069,422 + DVU1990 0.68 +1.0
2,069,422 + DVU1990 0.68 -0.9
2,069,441 + DVU1990 0.71 +0.2
2,069,488 - DVU1990 0.78 +0.0
2,069,490 + DVU1990 0.79 -0.2
2,069,515 - DVU1990 0.83 +2.4
2,069,519 + DVU1990 0.83 +0.2
2,069,594 + +0.0
2,069,614 - +1.1
2,069,624 - -0.5
2,069,633 + -1.6
2,069,646 - +0.1
2,069,669 + +1.8
2,069,872 - +0.1
2,069,878 - -0.3
2,070,008 + +0.4
2,070,071 - +2.1
2,070,142 + -0.4
2,070,142 + -0.3
2,070,212 - +0.1
2,070,212 - -1.9
2,070,229 - +0.5
2,070,343 + DVU1991 0.12 -0.0
2,070,387 + DVU1991 0.16 -0.5
2,070,588 + DVU1991 0.37 -1.2
2,070,611 + DVU1991 0.39 +0.1

Or see this region's nucleotide sequence