Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1986

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1985 and DVU1986 are separated by 400 nucleotidesDVU1986 and uvrA are separated by 178 nucleotides DVU1985: DVU1985 - conserved domain protein (TIGR), at 2,062,872 to 2,064,128 DVU1985 DVU1986: DVU1986 - conserved hypothetical protein (TIGR), at 2,064,529 to 2,064,960 DVU1986 DVU1987: uvrA - excinuclease ABC, A subunit (TIGR), at 2,065,139 to 2,068,009 uvrA Position (kb) 2064 2065Strain fitness (log2 ratio) -1 0 1 2 3at 2063.794 kb on - strand, within DVU1985at 2063.897 kb on + strand, within DVU1985at 2064.006 kb on - strandat 2064.094 kb on + strandat 2064.102 kb on - strandat 2064.165 kb on - strandat 2064.169 kb on + strandat 2064.177 kb on - strandat 2064.254 kb on - strandat 2064.269 kb on + strandat 2064.269 kb on + strandat 2064.277 kb on - strandat 2064.277 kb on - strandat 2064.289 kb on - strandat 2064.311 kb on - strandat 2064.455 kb on - strandat 2064.493 kb on + strandat 2064.493 kb on + strandat 2064.493 kb on + strandat 2064.493 kb on + strandat 2064.501 kb on - strandat 2064.501 kb on - strandat 2064.523 kb on - strandat 2064.593 kb on + strand, within DVU1986at 2064.765 kb on + strand, within DVU1986at 2064.786 kb on + strand, within DVU1986at 2064.826 kb on + strand, within DVU1986at 2064.834 kb on - strand, within DVU1986at 2064.861 kb on - strand, within DVU1986at 2064.894 kb on + strand, within DVU1986at 2064.916 kb on - strand, within DVU1986at 2065.106 kb on + strandat 2065.158 kb on + strandat 2065.327 kb on - strandat 2065.512 kb on + strand, within uvrAat 2065.513 kb on + strand, within uvrAat 2065.546 kb on + strand, within uvrAat 2065.546 kb on + strand, within uvrAat 2065.546 kb on + strand, within uvrAat 2065.546 kb on + strand, within uvrAat 2065.554 kb on - strand, within uvrAat 2065.554 kb on - strand, within uvrAat 2065.554 kb on - strand, within uvrAat 2065.569 kb on + strand, within uvrAat 2065.628 kb on + strand, within uvrAat 2065.636 kb on - strand, within uvrAat 2065.748 kb on + strand, within uvrAat 2065.806 kb on - strand, within uvrAat 2065.878 kb on + strand, within uvrAat 2065.943 kb on - strand, within uvrAat 2065.943 kb on - strand, within uvrA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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2,063,794 - DVU1985 0.73 +1.6
2,063,897 + DVU1985 0.82 +0.6
2,064,006 - -0.5
2,064,094 + +0.5
2,064,102 - +3.4
2,064,165 - -1.0
2,064,169 + -0.6
2,064,177 - -0.6
2,064,254 - -0.9
2,064,269 + +1.0
2,064,269 + +0.3
2,064,277 - +0.5
2,064,277 - +0.0
2,064,289 - -1.3
2,064,311 - -0.2
2,064,455 - -0.1
2,064,493 + +0.6
2,064,493 + +0.0
2,064,493 + -1.2
2,064,493 + +0.1
2,064,501 - +0.5
2,064,501 - +0.4
2,064,523 - +0.8
2,064,593 + DVU1986 0.15 +0.5
2,064,765 + DVU1986 0.55 -0.5
2,064,786 + DVU1986 0.59 -0.9
2,064,826 + DVU1986 0.69 -0.5
2,064,834 - DVU1986 0.71 -0.3
2,064,861 - DVU1986 0.77 -1.0
2,064,894 + DVU1986 0.84 +0.1
2,064,916 - DVU1986 0.90 -0.5
2,065,106 + +2.1
2,065,158 + +0.5
2,065,327 - -0.3
2,065,512 + uvrA DVU1987 0.13 +0.7
2,065,513 + uvrA DVU1987 0.13 -0.5
2,065,546 + uvrA DVU1987 0.14 -0.2
2,065,546 + uvrA DVU1987 0.14 -0.0
2,065,546 + uvrA DVU1987 0.14 -0.5
2,065,546 + uvrA DVU1987 0.14 +0.9
2,065,554 - uvrA DVU1987 0.14 -0.2
2,065,554 - uvrA DVU1987 0.14 -0.5
2,065,554 - uvrA DVU1987 0.14 +0.6
2,065,569 + uvrA DVU1987 0.15 -0.1
2,065,628 + uvrA DVU1987 0.17 -1.3
2,065,636 - uvrA DVU1987 0.17 +0.0
2,065,748 + uvrA DVU1987 0.21 -0.6
2,065,806 - uvrA DVU1987 0.23 -0.6
2,065,878 + uvrA DVU1987 0.26 -0.5
2,065,943 - uvrA DVU1987 0.28 +0.0
2,065,943 - uvrA DVU1987 0.28 +0.0

Or see this region's nucleotide sequence