Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltB and DVU1822 are separated by 2 nucleotides DVU1822 and gltB-1 are separated by 14 nucleotides
DVU1821: gltB - glutamate synthase, large subunit (VIMSS_AUTO), at 1,885,906 to 1,886,661
gltB
DVU1822: DVU1822 - glutamate synthase, amidotransferase subunit, putative (TIGR), at 1,886,664 to 1,887,758
DVU1822
DVU1823: gltB-1 - glutamate synthase, iron-sulfur cluster-binding subunit, putative (TIGR), at 1,887,773 to 1,889,296
gltB-1
Position (kb)
1886
1887
1888 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1885.750 kb on - strand at 1885.750 kb on - strand at 1886.025 kb on - strand, within gltB at 1886.065 kb on + strand, within gltB at 1886.070 kb on + strand, within gltB at 1886.121 kb on - strand, within gltB at 1886.147 kb on + strand, within gltB at 1886.265 kb on - strand, within gltB at 1886.357 kb on - strand, within gltB at 1886.430 kb on - strand, within gltB at 1886.437 kb on - strand, within gltB at 1886.441 kb on + strand, within gltB at 1886.441 kb on + strand, within gltB at 1886.442 kb on - strand, within gltB at 1886.449 kb on - strand, within gltB at 1886.449 kb on - strand, within gltB at 1886.449 kb on - strand, within gltB at 1886.469 kb on + strand, within gltB at 1886.476 kb on + strand, within gltB at 1886.708 kb on + strand at 1886.708 kb on + strand at 1886.716 kb on - strand at 1886.716 kb on - strand at 1886.874 kb on + strand, within DVU1822 at 1886.882 kb on - strand, within DVU1822 at 1886.884 kb on + strand, within DVU1822 at 1887.037 kb on + strand, within DVU1822 at 1887.133 kb on + strand, within DVU1822 at 1887.138 kb on + strand, within DVU1822 at 1887.198 kb on + strand, within DVU1822 at 1887.198 kb on + strand, within DVU1822 at 1887.352 kb on - strand, within DVU1822 at 1887.381 kb on - strand, within DVU1822 at 1887.399 kb on + strand, within DVU1822 at 1887.431 kb on + strand, within DVU1822 at 1887.487 kb on + strand, within DVU1822 at 1887.566 kb on + strand, within DVU1822 at 1887.566 kb on + strand, within DVU1822 at 1887.572 kb on - strand, within DVU1822 at 1887.622 kb on + strand, within DVU1822 at 1887.667 kb on + strand at 1887.681 kb on - strand at 1887.765 kb on + strand at 1887.830 kb on + strand at 1887.831 kb on - strand at 1887.861 kb on + strand at 1887.959 kb on + strand, within gltB-1 at 1887.969 kb on + strand, within gltB-1 at 1887.997 kb on - strand, within gltB-1 at 1888.007 kb on - strand, within gltB-1 at 1888.045 kb on + strand, within gltB-1 at 1888.180 kb on - strand, within gltB-1 at 1888.201 kb on + strand, within gltB-1 at 1888.206 kb on + strand, within gltB-1 at 1888.251 kb on + strand, within gltB-1 at 1888.260 kb on - strand, within gltB-1 at 1888.297 kb on - strand, within gltB-1 at 1888.378 kb on - strand, within gltB-1 at 1888.378 kb on - strand, within gltB-1 at 1888.401 kb on + strand, within gltB-1 at 1888.422 kb on + strand, within gltB-1 at 1888.463 kb on - strand, within gltB-1 at 1888.522 kb on - strand, within gltB-1 at 1888.578 kb on + strand, within gltB-1 at 1888.586 kb on - strand, within gltB-1 at 1888.647 kb on + strand, within gltB-1 at 1888.647 kb on + strand, within gltB-1 at 1888.655 kb on - strand, within gltB-1 at 1888.659 kb on + strand, within gltB-1 at 1888.669 kb on - strand, within gltB-1
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 1,885,750 - -0.2 1,885,750 - +1.9 1,886,025 - gltB DVU1821 0.16 -4.3 1,886,065 + gltB DVU1821 0.21 -3.3 1,886,070 + gltB DVU1821 0.22 +0.8 1,886,121 - gltB DVU1821 0.28 -4.8 1,886,147 + gltB DVU1821 0.32 -0.9 1,886,265 - gltB DVU1821 0.47 -5.1 1,886,357 - gltB DVU1821 0.60 -3.2 1,886,430 - gltB DVU1821 0.69 -4.0 1,886,437 - gltB DVU1821 0.70 -4.0 1,886,441 + gltB DVU1821 0.71 -2.9 1,886,441 + gltB DVU1821 0.71 -4.1 1,886,442 - gltB DVU1821 0.71 -2.7 1,886,449 - gltB DVU1821 0.72 -0.5 1,886,449 - gltB DVU1821 0.72 -2.5 1,886,449 - gltB DVU1821 0.72 -4.5 1,886,469 + gltB DVU1821 0.74 -2.2 1,886,476 + gltB DVU1821 0.75 -1.9 1,886,708 + -2.9 1,886,708 + -0.4 1,886,716 - -2.6 1,886,716 - -3.1 1,886,874 + DVU1822 0.19 -1.9 1,886,882 - DVU1822 0.20 -1.6 1,886,884 + DVU1822 0.20 -2.8 1,887,037 + DVU1822 0.34 -4.3 1,887,133 + DVU1822 0.43 -4.3 1,887,138 + DVU1822 0.43 -4.6 1,887,198 + DVU1822 0.49 -5.4 1,887,198 + DVU1822 0.49 -1.6 1,887,352 - DVU1822 0.63 -1.9 1,887,381 - DVU1822 0.65 -5.3 1,887,399 + DVU1822 0.67 -0.5 1,887,431 + DVU1822 0.70 -2.5 1,887,487 + DVU1822 0.75 -3.6 1,887,566 + DVU1822 0.82 -4.1 1,887,566 + DVU1822 0.82 -4.8 1,887,572 - DVU1822 0.83 -0.0 1,887,622 + DVU1822 0.87 -5.0 1,887,667 + -5.3 1,887,681 - -3.4 1,887,765 + -4.0 1,887,830 + -4.9 1,887,831 - -4.1 1,887,861 + -4.6 1,887,959 + gltB-1 DVU1823 0.12 -2.8 1,887,969 + gltB-1 DVU1823 0.13 -3.6 1,887,997 - gltB-1 DVU1823 0.15 -1.5 1,888,007 - gltB-1 DVU1823 0.15 +0.5 1,888,045 + gltB-1 DVU1823 0.18 -3.2 1,888,180 - gltB-1 DVU1823 0.27 -7.0 1,888,201 + gltB-1 DVU1823 0.28 -0.7 1,888,206 + gltB-1 DVU1823 0.28 -3.8 1,888,251 + gltB-1 DVU1823 0.31 -3.8 1,888,260 - gltB-1 DVU1823 0.32 -4.1 1,888,297 - gltB-1 DVU1823 0.34 -4.6 1,888,378 - gltB-1 DVU1823 0.40 -0.4 1,888,378 - gltB-1 DVU1823 0.40 -4.3 1,888,401 + gltB-1 DVU1823 0.41 -3.2 1,888,422 + gltB-1 DVU1823 0.43 -3.7 1,888,463 - gltB-1 DVU1823 0.45 -1.4 1,888,522 - gltB-1 DVU1823 0.49 -2.3 1,888,578 + gltB-1 DVU1823 0.53 +1.8 1,888,586 - gltB-1 DVU1823 0.53 -1.9 1,888,647 + gltB-1 DVU1823 0.57 -3.5 1,888,647 + gltB-1 DVU1823 0.57 -0.7 1,888,655 - gltB-1 DVU1823 0.58 -3.6 1,888,659 + gltB-1 DVU1823 0.58 -3.4 1,888,669 - gltB-1 DVU1823 0.59 -4.6
Or see this region's nucleotide sequence