Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1593

Experiment: MoLS4 with L-Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1592 and cheY-1 are separated by 26 nucleotidescheY-1 and cheA-1 are separated by 67 nucleotides DVU1592: DVU1592 - arginine N-succinyltransferase, beta subunit, putative (TIGR), at 1,673,985 to 1,675,727 DVU1592 DVU1593: cheY-1 - chemotaxis protein CheY (TIGR), at 1,675,754 to 1,676,116 cheY-1 DVU1594: cheA-1 - chemotaxis protein CheA (TIGR), at 1,676,184 to 1,678,310 cheA-1 Position (kb) 1675 1676 1677Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1674.820 kb on - strand, within DVU1592at 1674.827 kb on + strand, within DVU1592at 1674.835 kb on + strand, within DVU1592at 1674.835 kb on - strand, within DVU1592at 1674.846 kb on + strand, within DVU1592at 1674.883 kb on - strand, within DVU1592at 1674.996 kb on + strand, within DVU1592at 1675.028 kb on - strand, within DVU1592at 1675.061 kb on + strand, within DVU1592at 1675.081 kb on + strand, within DVU1592at 1675.081 kb on + strand, within DVU1592at 1675.348 kb on - strand, within DVU1592at 1675.436 kb on + strand, within DVU1592at 1675.444 kb on - strand, within DVU1592at 1675.481 kb on + strand, within DVU1592at 1675.496 kb on + strand, within DVU1592at 1675.503 kb on + strand, within DVU1592at 1675.517 kb on + strand, within DVU1592at 1675.525 kb on - strand, within DVU1592at 1675.532 kb on + strand, within DVU1592at 1675.594 kb on + strandat 1675.724 kb on - strandat 1675.729 kb on - strandat 1675.739 kb on - strandat 1675.742 kb on + strandat 1675.765 kb on + strandat 1675.897 kb on + strand, within cheY-1at 1675.931 kb on - strand, within cheY-1at 1675.988 kb on + strand, within cheY-1at 1676.068 kb on + strand, within cheY-1at 1676.166 kb on + strandat 1676.195 kb on + strandat 1676.229 kb on + strandat 1676.229 kb on + strandat 1676.375 kb on + strandat 1676.512 kb on + strand, within cheA-1at 1676.621 kb on + strand, within cheA-1at 1676.629 kb on - strand, within cheA-1at 1676.693 kb on - strand, within cheA-1at 1676.705 kb on + strand, within cheA-1at 1676.710 kb on + strand, within cheA-1at 1676.715 kb on + strand, within cheA-1at 1676.767 kb on + strand, within cheA-1at 1676.782 kb on + strand, within cheA-1at 1676.790 kb on - strand, within cheA-1at 1676.801 kb on + strand, within cheA-1at 1676.846 kb on - strand, within cheA-1at 1676.865 kb on + strand, within cheA-1at 1676.913 kb on - strand, within cheA-1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
remove
1,674,820 - DVU1592 0.48 -1.3
1,674,827 + DVU1592 0.48 -0.4
1,674,835 + DVU1592 0.49 -1.5
1,674,835 - DVU1592 0.49 -0.4
1,674,846 + DVU1592 0.49 -0.3
1,674,883 - DVU1592 0.52 -0.5
1,674,996 + DVU1592 0.58 -0.8
1,675,028 - DVU1592 0.60 -0.9
1,675,061 + DVU1592 0.62 -0.6
1,675,081 + DVU1592 0.63 -0.7
1,675,081 + DVU1592 0.63 +3.2
1,675,348 - DVU1592 0.78 -0.6
1,675,436 + DVU1592 0.83 +0.0
1,675,444 - DVU1592 0.84 -0.0
1,675,481 + DVU1592 0.86 -2.3
1,675,496 + DVU1592 0.87 -0.4
1,675,503 + DVU1592 0.87 -0.4
1,675,517 + DVU1592 0.88 -0.4
1,675,525 - DVU1592 0.88 -0.5
1,675,532 + DVU1592 0.89 -0.6
1,675,594 + +0.0
1,675,724 - -0.4
1,675,729 - -0.5
1,675,739 - -0.1
1,675,742 + -1.1
1,675,765 + +0.8
1,675,897 + cheY-1 DVU1593 0.39 -1.0
1,675,931 - cheY-1 DVU1593 0.49 -0.7
1,675,988 + cheY-1 DVU1593 0.64 -0.8
1,676,068 + cheY-1 DVU1593 0.87 -0.9
1,676,166 + +0.9
1,676,195 + +0.4
1,676,229 + -0.2
1,676,229 + +0.2
1,676,375 + +0.6
1,676,512 + cheA-1 DVU1594 0.15 +0.0
1,676,621 + cheA-1 DVU1594 0.21 -0.5
1,676,629 - cheA-1 DVU1594 0.21 -1.7
1,676,693 - cheA-1 DVU1594 0.24 -0.9
1,676,705 + cheA-1 DVU1594 0.24 +0.4
1,676,710 + cheA-1 DVU1594 0.25 -1.6
1,676,715 + cheA-1 DVU1594 0.25 -0.2
1,676,767 + cheA-1 DVU1594 0.27 +0.1
1,676,782 + cheA-1 DVU1594 0.28 -0.3
1,676,790 - cheA-1 DVU1594 0.28 -0.4
1,676,801 + cheA-1 DVU1594 0.29 -0.3
1,676,846 - cheA-1 DVU1594 0.31 +0.0
1,676,865 + cheA-1 DVU1594 0.32 -0.2
1,676,913 - cheA-1 DVU1594 0.34 +0.1

Or see this region's nucleotide sequence