Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gidB and DVU1251 overlap by 40 nucleotides DVU1251 and DVU1252 are separated by 128 nucleotides DVU1252 and DVU1253 are separated by 50 nucleotides DVU1253 and DVU1254 are separated by 38 nucleotides
DVU1250: gidB - methyltransferase GidB (TIGR), at 1,336,980 to 1,337,636
gidB
DVU1251: DVU1251 - hypothetical protein (TIGR), at 1,337,597 to 1,337,815
DVU1251
DVU1252: DVU1252 - membrane protein, putative (TIGR), at 1,337,944 to 1,340,220
DVU1252
DVU1253: DVU1253 - hypothetical protein (TIGR), at 1,340,271 to 1,340,399
DVU1253
DVU1254: DVU1254 - conserved hypothetical protein (TIGR), at 1,340,438 to 1,340,908
DVU1254
Position (kb)
1337
1338
1339
1340
1341 Strain fitness (log2 ratio)
-2
-1
0
1 at 1336.963 kb on + strand at 1337.021 kb on + strand at 1337.090 kb on - strand, within gidB at 1337.155 kb on + strand, within gidB at 1337.197 kb on - strand, within gidB at 1337.209 kb on - strand, within gidB at 1337.209 kb on - strand, within gidB at 1337.215 kb on + strand, within gidB at 1337.257 kb on + strand, within gidB at 1337.264 kb on + strand, within gidB at 1337.309 kb on - strand, within gidB at 1337.323 kb on + strand, within gidB at 1337.340 kb on + strand, within gidB at 1337.394 kb on - strand, within gidB at 1337.497 kb on + strand, within gidB at 1337.510 kb on + strand, within gidB at 1337.688 kb on + strand, within DVU1251 at 1337.739 kb on - strand, within DVU1251 at 1337.810 kb on + strand at 1337.825 kb on + strand at 1337.825 kb on + strand at 1337.838 kb on - strand at 1337.911 kb on + strand at 1338.822 kb on + strand, within DVU1252 at 1338.822 kb on + strand, within DVU1252 at 1338.834 kb on + strand, within DVU1252 at 1339.269 kb on + strand, within DVU1252 at 1340.218 kb on - strand at 1340.280 kb on - strand at 1340.295 kb on + strand, within DVU1253 at 1340.337 kb on - strand, within DVU1253 at 1340.342 kb on + strand, within DVU1253 at 1340.443 kb on + strand at 1340.467 kb on + strand at 1340.467 kb on + strand at 1340.483 kb on + strand at 1340.486 kb on - strand, within DVU1254 at 1340.574 kb on + strand, within DVU1254 at 1340.584 kb on + strand, within DVU1254 at 1340.689 kb on + strand, within DVU1254 at 1340.817 kb on - strand, within DVU1254 at 1340.817 kb on - strand, within DVU1254 at 1340.829 kb on - strand, within DVU1254 at 1340.840 kb on - strand, within DVU1254 at 1340.842 kb on - strand, within DVU1254 at 1340.901 kb on + strand at 1340.903 kb on + strand at 1340.909 kb on - strand at 1340.909 kb on - strand at 1340.911 kb on - strand at 1340.956 kb on - strand at 1340.966 kb on - strand at 1340.966 kb on - strand at 1341.012 kb on - strand at 1341.093 kb on + strand at 1341.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 1,336,963 + -0.8 1,337,021 + -2.1 1,337,090 - gidB DVU1250 0.17 -0.6 1,337,155 + gidB DVU1250 0.27 -1.7 1,337,197 - gidB DVU1250 0.33 -1.3 1,337,209 - gidB DVU1250 0.35 -0.3 1,337,209 - gidB DVU1250 0.35 -0.3 1,337,215 + gidB DVU1250 0.36 +0.8 1,337,257 + gidB DVU1250 0.42 +0.2 1,337,264 + gidB DVU1250 0.43 -0.2 1,337,309 - gidB DVU1250 0.50 -1.6 1,337,323 + gidB DVU1250 0.52 +0.7 1,337,340 + gidB DVU1250 0.55 -1.3 1,337,394 - gidB DVU1250 0.63 +0.4 1,337,497 + gidB DVU1250 0.79 +0.0 1,337,510 + gidB DVU1250 0.81 -1.3 1,337,688 + DVU1251 0.42 -0.8 1,337,739 - DVU1251 0.65 +0.5 1,337,810 + -0.7 1,337,825 + -0.1 1,337,825 + +0.4 1,337,838 - +0.3 1,337,911 + +0.4 1,338,822 + DVU1252 0.39 +1.5 1,338,822 + DVU1252 0.39 +1.1 1,338,834 + DVU1252 0.39 +0.2 1,339,269 + DVU1252 0.58 +1.0 1,340,218 - -0.9 1,340,280 - -0.2 1,340,295 + DVU1253 0.19 -0.1 1,340,337 - DVU1253 0.51 -0.8 1,340,342 + DVU1253 0.55 -2.0 1,340,443 + +0.6 1,340,467 + -0.8 1,340,467 + +0.3 1,340,483 + +0.2 1,340,486 - DVU1254 0.10 -0.2 1,340,574 + DVU1254 0.29 +1.3 1,340,584 + DVU1254 0.31 -0.0 1,340,689 + DVU1254 0.53 -1.9 1,340,817 - DVU1254 0.80 +0.8 1,340,817 - DVU1254 0.80 -0.3 1,340,829 - DVU1254 0.83 +0.5 1,340,840 - DVU1254 0.85 -0.6 1,340,842 - DVU1254 0.86 -0.1 1,340,901 + -1.9 1,340,903 + -0.3 1,340,909 - -0.1 1,340,909 - -0.8 1,340,911 - -0.4 1,340,956 - +0.7 1,340,966 - -0.4 1,340,966 - -0.9 1,341,012 - -0.8 1,341,093 + -0.1 1,341,166 - +0.2
Or see this region's nucleotide sequence