Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1068

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1067 and DVU1068 are separated by 25 nucleotidesDVU1068 and DVU1069 overlap by 4 nucleotidesDVU1069 and rbsA are separated by 4 nucleotides DVU1067: DVU1067 - membrane protein, Bmp family (TIGR), at 1,170,790 to 1,171,938 DVU1067 DVU1068: DVU1068 - branched-chain amino acid ABC transporter, permease protein (TIGR), at 1,171,964 to 1,173,028 DVU1068 DVU1069: DVU1069 - branched chain amino acid ABC transporter, permease protein (TIGR), at 1,173,025 to 1,173,945 DVU1069 DVU1070: rbsA - branched chain amino acid ABC transporter, ATP-binding protein (TIGR), at 1,173,950 to 1,175,524 rbsA Position (kb) 1171 1172 1173 1174Strain fitness (log2 ratio) -2 -1 0 1 2at 1171.007 kb on + strand, within DVU1067at 1171.012 kb on + strand, within DVU1067at 1171.062 kb on + strand, within DVU1067at 1171.102 kb on + strand, within DVU1067at 1171.131 kb on - strand, within DVU1067at 1171.346 kb on + strand, within DVU1067at 1171.356 kb on + strand, within DVU1067at 1171.552 kb on + strand, within DVU1067at 1171.601 kb on + strand, within DVU1067at 1171.621 kb on + strand, within DVU1067at 1171.791 kb on + strand, within DVU1067at 1171.814 kb on - strand, within DVU1067at 1171.847 kb on - strandat 1171.890 kb on + strandat 1172.156 kb on - strand, within DVU1068at 1172.184 kb on + strand, within DVU1068at 1172.263 kb on + strand, within DVU1068at 1172.625 kb on + strand, within DVU1068at 1172.712 kb on - strand, within DVU1068at 1172.732 kb on + strand, within DVU1068at 1172.764 kb on + strand, within DVU1068at 1172.780 kb on - strand, within DVU1068at 1173.069 kb on - strandat 1173.193 kb on - strand, within DVU1069at 1173.197 kb on - strand, within DVU1069at 1173.234 kb on + strand, within DVU1069at 1173.328 kb on - strand, within DVU1069at 1173.334 kb on - strand, within DVU1069at 1173.468 kb on - strand, within DVU1069at 1173.593 kb on + strand, within DVU1069at 1173.595 kb on + strand, within DVU1069at 1173.651 kb on + strand, within DVU1069at 1173.688 kb on + strand, within DVU1069

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,171,007 + DVU1067 0.19 +0.9
1,171,012 + DVU1067 0.19 -0.8
1,171,062 + DVU1067 0.24 +2.1
1,171,102 + DVU1067 0.27 -0.8
1,171,131 - DVU1067 0.30 +0.5
1,171,346 + DVU1067 0.48 -1.3
1,171,356 + DVU1067 0.49 -0.1
1,171,552 + DVU1067 0.66 -1.8
1,171,601 + DVU1067 0.71 -0.3
1,171,621 + DVU1067 0.72 -1.1
1,171,791 + DVU1067 0.87 -1.4
1,171,814 - DVU1067 0.89 -0.9
1,171,847 - -0.6
1,171,890 + -1.3
1,172,156 - DVU1068 0.18 +0.9
1,172,184 + DVU1068 0.21 -2.0
1,172,263 + DVU1068 0.28 +0.5
1,172,625 + DVU1068 0.62 -1.5
1,172,712 - DVU1068 0.70 -2.3
1,172,732 + DVU1068 0.72 +0.1
1,172,764 + DVU1068 0.75 -1.2
1,172,780 - DVU1068 0.77 -0.8
1,173,069 - +1.3
1,173,193 - DVU1069 0.18 -1.5
1,173,197 - DVU1069 0.19 -0.6
1,173,234 + DVU1069 0.23 +1.4
1,173,328 - DVU1069 0.33 -1.3
1,173,334 - DVU1069 0.34 -1.1
1,173,468 - DVU1069 0.48 -0.3
1,173,593 + DVU1069 0.62 -0.7
1,173,595 + DVU1069 0.62 -1.2
1,173,651 + DVU1069 0.68 -1.0
1,173,688 + DVU1069 0.72 -0.1

Or see this region's nucleotide sequence