Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0935

Experiment: MoLS4 with L-Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0933 and DVU0934 overlap by 20 nucleotidesDVU0934 and DVU0935 overlap by 4 nucleotidesDVU0935 and DVU0936 are separated by 632 nucleotidesDVU0936 and DVU0937 are separated by 13 nucleotides DVU0933: DVU0933 - response regulator (TIGR), at 1,023,539 to 1,024,783 DVU0933 DVU0934: DVU0934 - hypothetical protein (TIGR), at 1,024,764 to 1,025,024 DVU0934 DVU0935: DVU0935 - methyl-accepting chemotaxis protein (TIGR), at 1,025,021 to 1,027,525 DVU0935 DVU0936: DVU0936 - hypothetical protein (TIGR), at 1,028,158 to 1,028,445 DVU0936 DVU0937: DVU0937 - hypothetical protein (TIGR), at 1,028,459 to 1,028,845 DVU0937 Position (kb) 1025 1026 1027 1028Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1024.038 kb on + strand, within DVU0933at 1024.106 kb on + strand, within DVU0933at 1024.228 kb on + strand, within DVU0933at 1024.228 kb on + strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.236 kb on - strand, within DVU0933at 1024.351 kb on + strand, within DVU0933at 1024.377 kb on + strand, within DVU0933at 1024.390 kb on + strand, within DVU0933at 1024.398 kb on - strand, within DVU0933at 1024.452 kb on + strand, within DVU0933at 1024.465 kb on + strand, within DVU0933at 1024.539 kb on - strand, within DVU0933at 1024.539 kb on - strand, within DVU0933at 1024.680 kb on + strandat 1024.716 kb on - strandat 1024.821 kb on - strand, within DVU0934at 1024.964 kb on + strand, within DVU0934at 1024.964 kb on + strand, within DVU0934at 1024.972 kb on - strand, within DVU0934at 1025.097 kb on - strandat 1025.102 kb on - strandat 1025.157 kb on + strandat 1025.187 kb on + strandat 1025.326 kb on + strand, within DVU0935at 1025.334 kb on - strand, within DVU0935at 1025.404 kb on - strand, within DVU0935at 1025.418 kb on - strand, within DVU0935at 1025.485 kb on + strand, within DVU0935at 1025.532 kb on + strand, within DVU0935at 1025.540 kb on - strand, within DVU0935at 1025.565 kb on + strand, within DVU0935at 1025.583 kb on - strand, within DVU0935at 1025.745 kb on + strand, within DVU0935at 1025.814 kb on + strand, within DVU0935at 1025.822 kb on - strand, within DVU0935at 1026.058 kb on + strand, within DVU0935at 1026.133 kb on + strand, within DVU0935at 1026.133 kb on + strand, within DVU0935at 1026.133 kb on + strand, within DVU0935at 1026.140 kb on + strand, within DVU0935at 1026.207 kb on - strand, within DVU0935at 1026.237 kb on - strand, within DVU0935at 1026.257 kb on - strand, within DVU0935at 1026.299 kb on + strand, within DVU0935at 1026.418 kb on + strand, within DVU0935at 1026.460 kb on + strand, within DVU0935at 1026.461 kb on - strand, within DVU0935at 1026.473 kb on - strand, within DVU0935at 1026.481 kb on + strand, within DVU0935at 1026.500 kb on + strand, within DVU0935at 1026.578 kb on + strand, within DVU0935at 1026.696 kb on + strand, within DVU0935at 1026.898 kb on + strand, within DVU0935at 1026.906 kb on - strand, within DVU0935at 1026.938 kb on + strand, within DVU0935at 1026.946 kb on - strand, within DVU0935at 1026.946 kb on - strand, within DVU0935at 1026.946 kb on - strand, within DVU0935at 1026.946 kb on - strand, within DVU0935at 1026.972 kb on - strand, within DVU0935at 1027.176 kb on + strand, within DVU0935at 1027.223 kb on - strand, within DVU0935at 1027.247 kb on - strand, within DVU0935at 1027.265 kb on + strand, within DVU0935at 1027.270 kb on + strand, within DVU0935at 1027.270 kb on + strand, within DVU0935at 1027.396 kb on + strandat 1027.412 kb on + strandat 1027.417 kb on + strandat 1027.420 kb on - strandat 1027.425 kb on - strandat 1027.450 kb on - strandat 1027.457 kb on - strandat 1027.462 kb on + strandat 1027.470 kb on - strandat 1027.552 kb on - strandat 1027.602 kb on + strandat 1027.734 kb on + strandat 1027.737 kb on - strandat 1027.737 kb on - strandat 1027.737 kb on - strandat 1027.861 kb on - strandat 1028.013 kb on + strandat 1028.021 kb on - strandat 1028.029 kb on + strandat 1028.150 kb on - strandat 1028.153 kb on + strandat 1028.189 kb on - strand, within DVU0936at 1028.241 kb on - strand, within DVU0936at 1028.302 kb on - strand, within DVU0936at 1028.312 kb on - strand, within DVU0936at 1028.312 kb on - strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.314 kb on + strand, within DVU0936at 1028.484 kb on - strandat 1028.516 kb on + strand, within DVU0937

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N)
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1,024,038 + DVU0933 0.40 -0.0
1,024,106 + DVU0933 0.46 -0.6
1,024,228 + DVU0933 0.55 -0.2
1,024,228 + DVU0933 0.55 -0.3
1,024,236 - DVU0933 0.56 +0.1
1,024,236 - DVU0933 0.56 -0.5
1,024,236 - DVU0933 0.56 -0.9
1,024,236 - DVU0933 0.56 +0.3
1,024,351 + DVU0933 0.65 -0.5
1,024,377 + DVU0933 0.67 +0.7
1,024,390 + DVU0933 0.68 -0.6
1,024,398 - DVU0933 0.69 -0.6
1,024,452 + DVU0933 0.73 +3.2
1,024,465 + DVU0933 0.74 +0.8
1,024,539 - DVU0933 0.80 -0.2
1,024,539 - DVU0933 0.80 -0.4
1,024,680 + -0.4
1,024,716 - -0.1
1,024,821 - DVU0934 0.22 -0.4
1,024,964 + DVU0934 0.77 -0.3
1,024,964 + DVU0934 0.77 +1.6
1,024,972 - DVU0934 0.80 +1.5
1,025,097 - +0.1
1,025,102 - -0.2
1,025,157 + +0.0
1,025,187 + -0.6
1,025,326 + DVU0935 0.12 +0.1
1,025,334 - DVU0935 0.12 +0.0
1,025,404 - DVU0935 0.15 +0.2
1,025,418 - DVU0935 0.16 +0.9
1,025,485 + DVU0935 0.19 -0.3
1,025,532 + DVU0935 0.20 -1.0
1,025,540 - DVU0935 0.21 +0.3
1,025,565 + DVU0935 0.22 -2.2
1,025,583 - DVU0935 0.22 -0.3
1,025,745 + DVU0935 0.29 +0.0
1,025,814 + DVU0935 0.32 +2.9
1,025,822 - DVU0935 0.32 -0.7
1,026,058 + DVU0935 0.41 -0.2
1,026,133 + DVU0935 0.44 +0.1
1,026,133 + DVU0935 0.44 +1.9
1,026,133 + DVU0935 0.44 +0.4
1,026,140 + DVU0935 0.45 +0.4
1,026,207 - DVU0935 0.47 -0.0
1,026,237 - DVU0935 0.49 +1.9
1,026,257 - DVU0935 0.49 -0.5
1,026,299 + DVU0935 0.51 +0.4
1,026,418 + DVU0935 0.56 +0.8
1,026,460 + DVU0935 0.57 -0.2
1,026,461 - DVU0935 0.57 +0.6
1,026,473 - DVU0935 0.58 +0.4
1,026,481 + DVU0935 0.58 +0.3
1,026,500 + DVU0935 0.59 +0.9
1,026,578 + DVU0935 0.62 -0.0
1,026,696 + DVU0935 0.67 +0.2
1,026,898 + DVU0935 0.75 +0.0
1,026,906 - DVU0935 0.75 +1.1
1,026,938 + DVU0935 0.77 -0.1
1,026,946 - DVU0935 0.77 +0.3
1,026,946 - DVU0935 0.77 +0.3
1,026,946 - DVU0935 0.77 -1.4
1,026,946 - DVU0935 0.77 -0.4
1,026,972 - DVU0935 0.78 -0.1
1,027,176 + DVU0935 0.86 +0.3
1,027,223 - DVU0935 0.88 +0.3
1,027,247 - DVU0935 0.89 -0.5
1,027,265 + DVU0935 0.90 -1.3
1,027,270 + DVU0935 0.90 +1.2
1,027,270 + DVU0935 0.90 -0.3
1,027,396 + +0.5
1,027,412 + +0.1
1,027,417 + +2.1
1,027,420 - +0.5
1,027,425 - +0.9
1,027,450 - +0.5
1,027,457 - +0.0
1,027,462 + +0.0
1,027,470 - +0.7
1,027,552 - -1.4
1,027,602 + -1.0
1,027,734 + -1.3
1,027,737 - -0.4
1,027,737 - +2.4
1,027,737 - +0.6
1,027,861 - -0.1
1,028,013 + +0.6
1,028,021 - -0.4
1,028,029 + -0.9
1,028,150 - +0.4
1,028,153 + -1.8
1,028,189 - DVU0936 0.11 -2.1
1,028,241 - DVU0936 0.29 +0.1
1,028,302 - DVU0936 0.50 -1.9
1,028,312 - DVU0936 0.53 +0.4
1,028,312 - DVU0936 0.53 +0.6
1,028,314 + DVU0936 0.54 +1.3
1,028,314 + DVU0936 0.54 -0.2
1,028,314 + DVU0936 0.54 -0.1
1,028,484 - +0.4
1,028,516 + DVU0937 0.15 +0.3

Or see this region's nucleotide sequence