Experiment: MoLS4 with L-Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVU0805 are separated by 167 nucleotides DVU0805 and DVU0806 overlap by 4 nucleotides DVU0806 and trmU are separated by 269 nucleotides
DVU0804: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 889,782 to 891,254
atoC
DVU0805: DVU0805 - hypothetical protein (TIGR), at 891,422 to 891,718
DVU0805
DVU0806: DVU0806 - chemotaxis protein CheY, putative (TIGR), at 891,715 to 892,125
DVU0806
DVU0807: trmU - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR), at 892,395 to 893,435
trmU
Position (kb) 891
892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 890.763 kb on + strand, within atoC at 890.902 kb on + strand, within atoC at 890.931 kb on - strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.950 kb on + strand, within atoC at 890.953 kb on - strand, within atoC at 890.953 kb on - strand, within atoC at 890.953 kb on - strand, within atoC at 891.107 kb on + strand at 891.120 kb on - strand at 891.138 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.159 kb on - strand at 891.347 kb on - strand at 891.347 kb on - strand at 891.471 kb on - strand, within DVU0805 at 891.476 kb on - strand, within DVU0805 at 891.496 kb on + strand, within DVU0805 at 891.614 kb on + strand, within DVU0805 at 891.653 kb on - strand, within DVU0805 at 891.873 kb on + strand, within DVU0806 at 891.925 kb on + strand, within DVU0806 at 891.957 kb on - strand, within DVU0806 at 891.982 kb on + strand, within DVU0806 at 892.030 kb on + strand, within DVU0806 at 892.049 kb on - strand, within DVU0806 at 892.049 kb on - strand, within DVU0806 at 892.056 kb on - strand, within DVU0806 at 892.064 kb on + strand, within DVU0806 at 892.072 kb on - strand, within DVU0806 at 892.286 kb on + strand at 892.291 kb on + strand at 892.360 kb on - strand at 892.360 kb on - strand at 892.393 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glycine (N) remove 890,763 + atoC DVU0804 0.67 +0.5 890,902 + atoC DVU0804 0.76 -0.6 890,931 - atoC DVU0804 0.78 -0.9 890,945 + atoC DVU0804 0.79 +0.2 890,945 + atoC DVU0804 0.79 -0.2 890,945 + atoC DVU0804 0.79 +0.3 890,945 + atoC DVU0804 0.79 +0.4 890,945 + atoC DVU0804 0.79 +2.4 890,950 + atoC DVU0804 0.79 +0.1 890,953 - atoC DVU0804 0.79 +0.2 890,953 - atoC DVU0804 0.79 -0.4 890,953 - atoC DVU0804 0.79 -1.5 891,107 + -0.4 891,120 - -0.4 891,138 + +0.0 891,146 + +0.0 891,146 + -0.9 891,159 - +0.4 891,347 - -0.5 891,347 - -1.5 891,471 - DVU0805 0.16 -0.9 891,476 - DVU0805 0.18 -0.1 891,496 + DVU0805 0.25 -0.0 891,614 + DVU0805 0.65 -0.3 891,653 - DVU0805 0.78 -0.2 891,873 + DVU0806 0.38 -1.9 891,925 + DVU0806 0.51 +0.6 891,957 - DVU0806 0.59 -1.2 891,982 + DVU0806 0.65 -1.9 892,030 + DVU0806 0.77 -1.0 892,049 - DVU0806 0.81 -2.1 892,049 - DVU0806 0.81 -0.7 892,056 - DVU0806 0.83 -0.5 892,064 + DVU0806 0.85 -1.7 892,072 - DVU0806 0.87 -1.3 892,286 + -0.0 892,291 + -0.2 892,360 - +0.5 892,360 - -0.7 892,393 + +3.2
Or see this region's nucleotide sequence