Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.962.1 and Xcc-8004.963.1 are separated by 28 nucleotides Xcc-8004.963.1 and Xcc-8004.964.1 are separated by 126 nucleotides
Xcc-8004.962.1: Xcc-8004.962.1 - hypothetical protein, at 910,402 to 913,281
Xcc-8004.962.1
Xcc-8004.963.1: Xcc-8004.963.1 - hypothetical protein, at 913,310 to 913,897
Xcc-8004.963.1
Xcc-8004.964.1: Xcc-8004.964.1 - Choline dehydrogenase (EC 1.1.99.1), at 914,024 to 915,694
Xcc-8004.964.1
Position (kb) 913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 912.442 kb on + strand, within Xcc-8004.962.1 at 912.442 kb on + strand, within Xcc-8004.962.1 at 912.443 kb on - strand, within Xcc-8004.962.1 at 912.599 kb on - strand, within Xcc-8004.962.1 at 912.599 kb on - strand, within Xcc-8004.962.1 at 912.599 kb on - strand, within Xcc-8004.962.1 at 912.856 kb on + strand, within Xcc-8004.962.1 at 912.856 kb on + strand, within Xcc-8004.962.1 at 912.918 kb on + strand, within Xcc-8004.962.1 at 913.093 kb on + strand at 913.093 kb on + strand at 913.093 kb on + strand at 913.094 kb on - strand at 913.094 kb on - strand at 913.094 kb on - strand at 913.094 kb on - strand at 913.228 kb on + strand at 913.228 kb on + strand at 913.228 kb on + strand at 913.229 kb on - strand at 913.255 kb on + strand at 913.256 kb on - strand at 913.256 kb on - strand at 913.279 kb on + strand at 913.279 kb on + strand at 913.667 kb on + strand, within Xcc-8004.963.1 at 913.667 kb on + strand, within Xcc-8004.963.1 at 913.668 kb on - strand, within Xcc-8004.963.1 at 913.668 kb on - strand, within Xcc-8004.963.1 at 913.668 kb on - strand, within Xcc-8004.963.1 at 913.668 kb on - strand, within Xcc-8004.963.1 at 913.719 kb on + strand, within Xcc-8004.963.1 at 913.719 kb on + strand, within Xcc-8004.963.1 at 913.727 kb on + strand, within Xcc-8004.963.1 at 913.728 kb on - strand, within Xcc-8004.963.1 at 913.836 kb on + strand, within Xcc-8004.963.1 at 913.949 kb on - strand at 913.949 kb on - strand at 913.952 kb on + strand at 913.952 kb on + strand at 913.953 kb on - strand at 913.953 kb on - strand at 913.953 kb on - strand at 914.033 kb on + strand at 914.055 kb on + strand at 914.056 kb on - strand at 914.056 kb on - strand at 914.097 kb on - strand at 914.274 kb on + strand, within Xcc-8004.964.1 at 914.448 kb on + strand, within Xcc-8004.964.1 at 914.519 kb on - strand, within Xcc-8004.964.1 at 914.577 kb on + strand, within Xcc-8004.964.1 at 914.577 kb on + strand, within Xcc-8004.964.1 at 914.578 kb on - strand, within Xcc-8004.964.1 at 914.772 kb on + strand, within Xcc-8004.964.1 at 914.772 kb on + strand, within Xcc-8004.964.1 at 914.772 kb on + strand, within Xcc-8004.964.1 at 914.772 kb on + strand, within Xcc-8004.964.1 at 914.772 kb on + strand, within Xcc-8004.964.1 at 914.773 kb on - strand, within Xcc-8004.964.1 at 914.773 kb on - strand, within Xcc-8004.964.1 at 914.773 kb on - strand, within Xcc-8004.964.1 at 914.773 kb on - strand, within Xcc-8004.964.1 at 914.781 kb on + strand, within Xcc-8004.964.1 at 914.781 kb on + strand, within Xcc-8004.964.1 at 914.781 kb on + strand, within Xcc-8004.964.1 at 914.782 kb on - strand, within Xcc-8004.964.1 at 914.782 kb on - strand, within Xcc-8004.964.1 at 914.782 kb on - strand, within Xcc-8004.964.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 912,442 + Xcc-8004.962.1 0.71 +0.0 912,442 + Xcc-8004.962.1 0.71 -0.5 912,443 - Xcc-8004.962.1 0.71 -2.3 912,599 - Xcc-8004.962.1 0.76 +2.6 912,599 - Xcc-8004.962.1 0.76 +0.5 912,599 - Xcc-8004.962.1 0.76 -0.4 912,856 + Xcc-8004.962.1 0.85 +0.0 912,856 + Xcc-8004.962.1 0.85 +1.3 912,918 + Xcc-8004.962.1 0.87 +3.0 913,093 + +0.4 913,093 + +0.9 913,093 + -1.4 913,094 - +0.6 913,094 - -0.1 913,094 - +0.2 913,094 - +0.4 913,228 + -0.3 913,228 + +1.1 913,228 + +0.5 913,229 - -1.9 913,255 + +1.8 913,256 - +1.0 913,256 - +0.1 913,279 + +2.2 913,279 + -2.0 913,667 + Xcc-8004.963.1 0.61 -0.1 913,667 + Xcc-8004.963.1 0.61 +0.5 913,668 - Xcc-8004.963.1 0.61 +0.6 913,668 - Xcc-8004.963.1 0.61 +6.5 913,668 - Xcc-8004.963.1 0.61 -2.8 913,668 - Xcc-8004.963.1 0.61 -0.3 913,719 + Xcc-8004.963.1 0.70 +0.5 913,719 + Xcc-8004.963.1 0.70 +1.2 913,727 + Xcc-8004.963.1 0.71 -0.7 913,728 - Xcc-8004.963.1 0.71 -0.1 913,836 + Xcc-8004.963.1 0.89 +1.8 913,949 - -0.7 913,949 - +2.1 913,952 + -1.4 913,952 + +0.6 913,953 - +2.1 913,953 - +0.5 913,953 - -1.3 914,033 + -0.4 914,055 + -2.0 914,056 - +2.4 914,056 - +1.0 914,097 - +3.3 914,274 + Xcc-8004.964.1 0.15 +0.1 914,448 + Xcc-8004.964.1 0.25 -2.5 914,519 - Xcc-8004.964.1 0.30 +1.0 914,577 + Xcc-8004.964.1 0.33 +0.7 914,577 + Xcc-8004.964.1 0.33 -3.5 914,578 - Xcc-8004.964.1 0.33 +0.8 914,772 + Xcc-8004.964.1 0.45 +1.8 914,772 + Xcc-8004.964.1 0.45 -0.6 914,772 + Xcc-8004.964.1 0.45 +1.1 914,772 + Xcc-8004.964.1 0.45 -2.6 914,772 + Xcc-8004.964.1 0.45 -1.3 914,773 - Xcc-8004.964.1 0.45 -0.7 914,773 - Xcc-8004.964.1 0.45 +2.0 914,773 - Xcc-8004.964.1 0.45 -1.2 914,773 - Xcc-8004.964.1 0.45 -0.1 914,781 + Xcc-8004.964.1 0.45 +1.6 914,781 + Xcc-8004.964.1 0.45 -1.5 914,781 + Xcc-8004.964.1 0.45 +0.8 914,782 - Xcc-8004.964.1 0.45 -0.6 914,782 - Xcc-8004.964.1 0.45 +1.3 914,782 - Xcc-8004.964.1 0.45 +0.8
Or see this region's nucleotide sequence