Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.932.1 and Xcc-8004.933.1 are separated by 101 nucleotides Xcc-8004.933.1 and Xcc-8004.934.1 are separated by 6 nucleotides Xcc-8004.934.1 and Xcc-8004.935.1 are separated by 67 nucleotides
Xcc-8004.932.1: Xcc-8004.932.1 - histidine kinase/response regulator hybrid protein, at 875,275 to 876,777
Xcc-8004.932.1
Xcc-8004.933.1: Xcc-8004.933.1 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 876,879 to 877,376
Xcc-8004.933.1
Xcc-8004.934.1: Xcc-8004.934.1 - FolM Alternative dihydrofolate reductase 1, at 877,383 to 878,120
Xcc-8004.934.1
Xcc-8004.935.1: Xcc-8004.935.1 - COG1565: Uncharacterized conserved protein, at 878,188 to 879,372
Xcc-8004.935.1
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 876.628 kb on + strand at 876.697 kb on - strand at 876.812 kb on + strand at 876.812 kb on + strand at 876.813 kb on - strand at 876.813 kb on - strand at 876.982 kb on - strand, within Xcc-8004.933.1 at 877.375 kb on - strand at 877.418 kb on + strand at 877.419 kb on - strand at 877.419 kb on - strand at 877.419 kb on - strand at 877.657 kb on + strand, within Xcc-8004.934.1 at 877.658 kb on - strand, within Xcc-8004.934.1 at 878.125 kb on + strand at 878.125 kb on + strand at 878.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 876,628 + +1.5 876,697 - +1.3 876,812 + -2.6 876,812 + -2.4 876,813 - +0.9 876,813 - -1.3 876,982 - Xcc-8004.933.1 0.21 +0.9 877,375 - -0.7 877,418 + +0.6 877,419 - +1.1 877,419 - -1.3 877,419 - +0.7 877,657 + Xcc-8004.934.1 0.37 +1.1 877,658 - Xcc-8004.934.1 0.37 +1.5 878,125 + +0.3 878,125 + -0.6 878,154 + -0.3
Or see this region's nucleotide sequence