Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.790.1 and Xcc-8004.791.1 are separated by 38 nucleotides Xcc-8004.791.1 and Xcc-8004.792.1 are separated by 190 nucleotides Xcc-8004.792.1 and Xcc-8004.793.1 are separated by 46 nucleotides
Xcc-8004.790.1: Xcc-8004.790.1 - putative; ORF located using Glimmer/Genemark, at 735,393 to 736,244
Xcc-8004.790.1
Xcc-8004.791.1: Xcc-8004.791.1 - FIG01211375: hypothetical protein, at 736,283 to 736,594
Xcc-8004.791.1
Xcc-8004.792.1: Xcc-8004.792.1 - FIG01211403: hypothetical protein, at 736,785 to 737,423
Xcc-8004.792.1
Xcc-8004.793.1: Xcc-8004.793.1 - putative; ORF located using Glimmer/Genemark, at 737,470 to 737,766
Xcc-8004.793.1
Position (kb) 736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.291 kb on - strand at 735.291 kb on - strand at 735.292 kb on + strand at 735.306 kb on - strand at 735.423 kb on - strand at 735.423 kb on - strand at 735.672 kb on - strand, within Xcc-8004.790.1 at 735.824 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.103 kb on + strand, within Xcc-8004.790.1 at 736.104 kb on - strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.106 kb on + strand, within Xcc-8004.790.1 at 736.279 kb on + strand at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.371 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.436 kb on + strand, within Xcc-8004.791.1 at 736.437 kb on - strand, within Xcc-8004.791.1 at 736.470 kb on + strand, within Xcc-8004.791.1 at 736.500 kb on - strand, within Xcc-8004.791.1 at 736.734 kb on + strand at 736.734 kb on + strand at 736.734 kb on + strand at 736.844 kb on - strand at 736.850 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.056 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.096 kb on - strand, within Xcc-8004.792.1 at 737.350 kb on - strand, within Xcc-8004.792.1 at 737.437 kb on + strand at 737.437 kb on + strand at 737.437 kb on + strand at 737.437 kb on + strand at 737.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 735,291 - +0.6 735,291 - -0.2 735,292 + -1.4 735,306 - +2.0 735,423 - -0.9 735,423 - -0.4 735,672 - Xcc-8004.790.1 0.33 -2.0 735,824 + Xcc-8004.790.1 0.51 -0.9 736,103 + Xcc-8004.790.1 0.83 +0.6 736,103 + Xcc-8004.790.1 0.83 -1.3 736,104 - Xcc-8004.790.1 0.83 -0.3 736,106 + Xcc-8004.790.1 0.84 +0.4 736,106 + Xcc-8004.790.1 0.84 -0.0 736,279 + -0.2 736,371 + Xcc-8004.791.1 0.28 -2.4 736,371 + Xcc-8004.791.1 0.28 -2.5 736,436 + Xcc-8004.791.1 0.49 -3.0 736,436 + Xcc-8004.791.1 0.49 -1.5 736,437 - Xcc-8004.791.1 0.49 -1.4 736,470 + Xcc-8004.791.1 0.60 -3.7 736,500 - Xcc-8004.791.1 0.70 -0.0 736,734 + +0.5 736,734 + -0.3 736,734 + -0.3 736,844 - +1.5 736,850 - Xcc-8004.792.1 0.10 +0.3 737,056 - Xcc-8004.792.1 0.42 +1.4 737,056 - Xcc-8004.792.1 0.42 +0.4 737,056 - Xcc-8004.792.1 0.42 +0.7 737,096 - Xcc-8004.792.1 0.49 +0.6 737,096 - Xcc-8004.792.1 0.49 -1.4 737,350 - Xcc-8004.792.1 0.88 -1.8 737,437 + +0.6 737,437 + -2.2 737,437 + +1.2 737,437 + +0.2 737,438 - -0.7
Or see this region's nucleotide sequence