Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.751.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.748.1 and Xcc-8004.751.1 are separated by 239 nucleotidesXcc-8004.751.1 and Xcc-8004.752.1 overlap by 4 nucleotides Xcc-8004.748.1: Xcc-8004.748.1 - Serine phosphatase RsbU, regulator of sigma subunit, at 696,000 to 698,081 Xcc-8004.748.1 Xcc-8004.751.1: Xcc-8004.751.1 - FIG01210776: hypothetical protein, at 698,321 to 698,989 Xcc-8004.751.1 Xcc-8004.752.1: Xcc-8004.752.1 - FIG01212349: hypothetical protein, at 698,986 to 700,299 Xcc-8004.752.1 Position (kb) 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 697.344 kb on + strand, within Xcc-8004.748.1at 697.344 kb on + strand, within Xcc-8004.748.1at 697.344 kb on + strand, within Xcc-8004.748.1at 697.345 kb on - strand, within Xcc-8004.748.1at 697.345 kb on - strand, within Xcc-8004.748.1at 697.450 kb on + strand, within Xcc-8004.748.1at 697.450 kb on + strand, within Xcc-8004.748.1at 697.450 kb on + strand, within Xcc-8004.748.1at 697.450 kb on + strand, within Xcc-8004.748.1at 697.451 kb on - strand, within Xcc-8004.748.1at 697.451 kb on - strand, within Xcc-8004.748.1at 697.460 kb on - strand, within Xcc-8004.748.1at 697.460 kb on - strand, within Xcc-8004.748.1at 697.460 kb on - strand, within Xcc-8004.748.1at 697.460 kb on - strand, within Xcc-8004.748.1at 697.559 kb on - strand, within Xcc-8004.748.1at 697.612 kb on + strand, within Xcc-8004.748.1at 697.613 kb on - strand, within Xcc-8004.748.1at 697.882 kb on + strandat 697.883 kb on - strandat 698.117 kb on - strandat 698.230 kb on + strandat 698.250 kb on + strandat 698.250 kb on + strandat 698.250 kb on + strandat 698.250 kb on + strandat 698.259 kb on + strandat 698.259 kb on + strandat 698.260 kb on - strandat 698.260 kb on - strandat 698.287 kb on + strandat 698.287 kb on + strandat 698.335 kb on + strandat 698.506 kb on + strand, within Xcc-8004.751.1at 698.506 kb on + strand, within Xcc-8004.751.1at 698.558 kb on + strand, within Xcc-8004.751.1at 698.559 kb on - strand, within Xcc-8004.751.1at 698.684 kb on + strand, within Xcc-8004.751.1at 698.685 kb on - strand, within Xcc-8004.751.1at 698.685 kb on - strand, within Xcc-8004.751.1at 698.711 kb on + strand, within Xcc-8004.751.1at 698.711 kb on + strand, within Xcc-8004.751.1at 698.711 kb on + strand, within Xcc-8004.751.1at 698.712 kb on - strand, within Xcc-8004.751.1at 698.712 kb on - strand, within Xcc-8004.751.1at 698.712 kb on - strand, within Xcc-8004.751.1at 698.712 kb on - strand, within Xcc-8004.751.1at 698.712 kb on - strand, within Xcc-8004.751.1at 698.712 kb on - strand, within Xcc-8004.751.1at 698.712 kb on - strand, within Xcc-8004.751.1at 698.714 kb on + strand, within Xcc-8004.751.1at 698.714 kb on + strand, within Xcc-8004.751.1at 698.849 kb on + strand, within Xcc-8004.751.1at 698.849 kb on + strand, within Xcc-8004.751.1at 698.852 kb on + strand, within Xcc-8004.751.1at 698.887 kb on + strand, within Xcc-8004.751.1at 698.887 kb on + strand, within Xcc-8004.751.1at 698.888 kb on - strand, within Xcc-8004.751.1at 698.888 kb on - strand, within Xcc-8004.751.1at 698.888 kb on - strand, within Xcc-8004.751.1at 698.953 kb on + strandat 698.953 kb on + strandat 698.954 kb on - strandat 698.954 kb on - strandat 698.956 kb on + strandat 698.956 kb on + strandat 698.956 kb on + strandat 698.957 kb on - strandat 698.957 kb on - strandat 699.007 kb on + strandat 699.008 kb on - strandat 699.008 kb on - strandat 699.031 kb on + strandat 699.031 kb on + strandat 699.031 kb on + strandat 699.032 kb on - strandat 699.032 kb on - strandat 699.047 kb on + strandat 699.047 kb on + strandat 699.047 kb on + strandat 699.048 kb on - strandat 699.100 kb on + strandat 699.140 kb on - strand, within Xcc-8004.752.1at 699.154 kb on + strand, within Xcc-8004.752.1at 699.154 kb on + strand, within Xcc-8004.752.1at 699.154 kb on + strand, within Xcc-8004.752.1at 699.154 kb on + strand, within Xcc-8004.752.1at 699.155 kb on - strand, within Xcc-8004.752.1at 699.179 kb on + strand, within Xcc-8004.752.1at 699.179 kb on + strand, within Xcc-8004.752.1at 699.180 kb on - strand, within Xcc-8004.752.1at 699.180 kb on - strand, within Xcc-8004.752.1at 699.180 kb on - strand, within Xcc-8004.752.1at 699.180 kb on - strand, within Xcc-8004.752.1at 699.180 kb on - strand, within Xcc-8004.752.1at 699.244 kb on - strand, within Xcc-8004.752.1at 699.244 kb on - strand, within Xcc-8004.752.1at 699.304 kb on + strand, within Xcc-8004.752.1at 699.305 kb on - strand, within Xcc-8004.752.1at 699.305 kb on - strand, within Xcc-8004.752.1at 699.305 kb on - strand, within Xcc-8004.752.1at 699.305 kb on - strand, within Xcc-8004.752.1at 699.305 kb on - strand, within Xcc-8004.752.1at 699.305 kb on - strand, within Xcc-8004.752.1at 699.426 kb on + strand, within Xcc-8004.752.1at 699.426 kb on + strand, within Xcc-8004.752.1at 699.434 kb on - strand, within Xcc-8004.752.1at 699.455 kb on - strand, within Xcc-8004.752.1at 699.550 kb on + strand, within Xcc-8004.752.1at 699.570 kb on + strand, within Xcc-8004.752.1at 699.578 kb on + strand, within Xcc-8004.752.1at 699.579 kb on - strand, within Xcc-8004.752.1at 699.579 kb on - strand, within Xcc-8004.752.1at 699.579 kb on - strand, within Xcc-8004.752.1at 699.579 kb on - strand, within Xcc-8004.752.1at 699.579 kb on - strand, within Xcc-8004.752.1at 699.579 kb on - strand, within Xcc-8004.752.1at 699.579 kb on - strand, within Xcc-8004.752.1at 699.593 kb on - strand, within Xcc-8004.752.1at 699.593 kb on - strand, within Xcc-8004.752.1at 699.593 kb on - strand, within Xcc-8004.752.1at 699.594 kb on + strand, within Xcc-8004.752.1at 699.594 kb on + strand, within Xcc-8004.752.1at 699.595 kb on - strand, within Xcc-8004.752.1at 699.595 kb on - strand, within Xcc-8004.752.1at 699.595 kb on - strand, within Xcc-8004.752.1at 699.603 kb on + strand, within Xcc-8004.752.1at 699.604 kb on - strand, within Xcc-8004.752.1at 699.651 kb on - strand, within Xcc-8004.752.1at 699.666 kb on + strand, within Xcc-8004.752.1at 699.666 kb on + strand, within Xcc-8004.752.1at 699.666 kb on + strand, within Xcc-8004.752.1at 699.757 kb on + strand, within Xcc-8004.752.1at 699.775 kb on - strand, within Xcc-8004.752.1at 699.777 kb on + strand, within Xcc-8004.752.1at 699.777 kb on + strand, within Xcc-8004.752.1at 699.777 kb on + strand, within Xcc-8004.752.1at 699.778 kb on - strand, within Xcc-8004.752.1at 699.778 kb on - strand, within Xcc-8004.752.1at 699.789 kb on + strand, within Xcc-8004.752.1at 699.801 kb on + strand, within Xcc-8004.752.1at 699.801 kb on + strand, within Xcc-8004.752.1at 699.802 kb on - strand, within Xcc-8004.752.1at 699.825 kb on + strand, within Xcc-8004.752.1at 699.825 kb on + strand, within Xcc-8004.752.1at 699.825 kb on + strand, within Xcc-8004.752.1at 699.826 kb on - strand, within Xcc-8004.752.1at 699.826 kb on - strand, within Xcc-8004.752.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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697,344 + Xcc-8004.748.1 0.65 +0.4
697,344 + Xcc-8004.748.1 0.65 -1.8
697,344 + Xcc-8004.748.1 0.65 -1.4
697,345 - Xcc-8004.748.1 0.65 -1.3
697,345 - Xcc-8004.748.1 0.65 -0.5
697,450 + Xcc-8004.748.1 0.70 +1.0
697,450 + Xcc-8004.748.1 0.70 -2.3
697,450 + Xcc-8004.748.1 0.70 +0.2
697,450 + Xcc-8004.748.1 0.70 -2.7
697,451 - Xcc-8004.748.1 0.70 +0.9
697,451 - Xcc-8004.748.1 0.70 -1.2
697,460 - Xcc-8004.748.1 0.70 +1.1
697,460 - Xcc-8004.748.1 0.70 +1.4
697,460 - Xcc-8004.748.1 0.70 +0.3
697,460 - Xcc-8004.748.1 0.70 +0.7
697,559 - Xcc-8004.748.1 0.75 -0.4
697,612 + Xcc-8004.748.1 0.77 +0.7
697,613 - Xcc-8004.748.1 0.77 +0.5
697,882 + -0.4
697,883 - +0.5
698,117 - +0.5
698,230 + -1.8
698,250 + -0.2
698,250 + +0.6
698,250 + +1.7
698,250 + +0.3
698,259 + -0.5
698,259 + +0.3
698,260 - +0.1
698,260 - +0.8
698,287 + -0.1
698,287 + -0.3
698,335 + +0.5
698,506 + Xcc-8004.751.1 0.28 +3.4
698,506 + Xcc-8004.751.1 0.28 +0.2
698,558 + Xcc-8004.751.1 0.35 +2.3
698,559 - Xcc-8004.751.1 0.36 -3.2
698,684 + Xcc-8004.751.1 0.54 -0.8
698,685 - Xcc-8004.751.1 0.54 +0.5
698,685 - Xcc-8004.751.1 0.54 -0.2
698,711 + Xcc-8004.751.1 0.58 -1.3
698,711 + Xcc-8004.751.1 0.58 -1.5
698,711 + Xcc-8004.751.1 0.58 +1.4
698,712 - Xcc-8004.751.1 0.58 +1.8
698,712 - Xcc-8004.751.1 0.58 -1.0
698,712 - Xcc-8004.751.1 0.58 -2.2
698,712 - Xcc-8004.751.1 0.58 -0.4
698,712 - Xcc-8004.751.1 0.58 -0.1
698,712 - Xcc-8004.751.1 0.58 +0.8
698,712 - Xcc-8004.751.1 0.58 +0.5
698,714 + Xcc-8004.751.1 0.59 +2.6
698,714 + Xcc-8004.751.1 0.59 +0.5
698,849 + Xcc-8004.751.1 0.79 +2.6
698,849 + Xcc-8004.751.1 0.79 -1.0
698,852 + Xcc-8004.751.1 0.79 -0.3
698,887 + Xcc-8004.751.1 0.85 +0.1
698,887 + Xcc-8004.751.1 0.85 +2.0
698,888 - Xcc-8004.751.1 0.85 +2.0
698,888 - Xcc-8004.751.1 0.85 +1.9
698,888 - Xcc-8004.751.1 0.85 +1.2
698,953 + +2.3
698,953 + -0.3
698,954 - +1.2
698,954 - +1.4
698,956 + +2.5
698,956 + +1.8
698,956 + -1.5
698,957 - -2.3
698,957 - +1.3
699,007 + -2.5
699,008 - -1.5
699,008 - +0.3
699,031 + +1.1
699,031 + -0.7
699,031 + +0.7
699,032 - +0.5
699,032 - +0.9
699,047 + +1.0
699,047 + -2.4
699,047 + -1.5
699,048 - +0.5
699,100 + -0.7
699,140 - Xcc-8004.752.1 0.12 +0.5
699,154 + Xcc-8004.752.1 0.13 -1.5
699,154 + Xcc-8004.752.1 0.13 +0.3
699,154 + Xcc-8004.752.1 0.13 -1.2
699,154 + Xcc-8004.752.1 0.13 +1.4
699,155 - Xcc-8004.752.1 0.13 -1.6
699,179 + Xcc-8004.752.1 0.15 +3.1
699,179 + Xcc-8004.752.1 0.15 -0.9
699,180 - Xcc-8004.752.1 0.15 -1.9
699,180 - Xcc-8004.752.1 0.15 -1.2
699,180 - Xcc-8004.752.1 0.15 -1.1
699,180 - Xcc-8004.752.1 0.15 -2.6
699,180 - Xcc-8004.752.1 0.15 +0.5
699,244 - Xcc-8004.752.1 0.20 -1.6
699,244 - Xcc-8004.752.1 0.20 -0.6
699,304 + Xcc-8004.752.1 0.24 +0.9
699,305 - Xcc-8004.752.1 0.24 -1.8
699,305 - Xcc-8004.752.1 0.24 -1.3
699,305 - Xcc-8004.752.1 0.24 +0.9
699,305 - Xcc-8004.752.1 0.24 +1.0
699,305 - Xcc-8004.752.1 0.24 +0.2
699,305 - Xcc-8004.752.1 0.24 -1.3
699,426 + Xcc-8004.752.1 0.33 +1.4
699,426 + Xcc-8004.752.1 0.33 -0.6
699,434 - Xcc-8004.752.1 0.34 +1.9
699,455 - Xcc-8004.752.1 0.36 -2.7
699,550 + Xcc-8004.752.1 0.43 +3.7
699,570 + Xcc-8004.752.1 0.44 -0.7
699,578 + Xcc-8004.752.1 0.45 -0.5
699,579 - Xcc-8004.752.1 0.45 -3.2
699,579 - Xcc-8004.752.1 0.45 +1.2
699,579 - Xcc-8004.752.1 0.45 +0.1
699,579 - Xcc-8004.752.1 0.45 +0.7
699,579 - Xcc-8004.752.1 0.45 -1.7
699,579 - Xcc-8004.752.1 0.45 +0.5
699,579 - Xcc-8004.752.1 0.45 -2.6
699,593 - Xcc-8004.752.1 0.46 +1.3
699,593 - Xcc-8004.752.1 0.46 -0.3
699,593 - Xcc-8004.752.1 0.46 +2.0
699,594 + Xcc-8004.752.1 0.46 +0.2
699,594 + Xcc-8004.752.1 0.46 +0.0
699,595 - Xcc-8004.752.1 0.46 -2.8
699,595 - Xcc-8004.752.1 0.46 +0.7
699,595 - Xcc-8004.752.1 0.46 -0.7
699,603 + Xcc-8004.752.1 0.47 +0.1
699,604 - Xcc-8004.752.1 0.47 +0.1
699,651 - Xcc-8004.752.1 0.51 +0.1
699,666 + Xcc-8004.752.1 0.52 -0.9
699,666 + Xcc-8004.752.1 0.52 -1.9
699,666 + Xcc-8004.752.1 0.52 -1.5
699,757 + Xcc-8004.752.1 0.59 +0.5
699,775 - Xcc-8004.752.1 0.60 +0.8
699,777 + Xcc-8004.752.1 0.60 +1.4
699,777 + Xcc-8004.752.1 0.60 +1.0
699,777 + Xcc-8004.752.1 0.60 -1.0
699,778 - Xcc-8004.752.1 0.60 +0.3
699,778 - Xcc-8004.752.1 0.60 +0.7
699,789 + Xcc-8004.752.1 0.61 +1.4
699,801 + Xcc-8004.752.1 0.62 +0.1
699,801 + Xcc-8004.752.1 0.62 +0.1
699,802 - Xcc-8004.752.1 0.62 -2.0
699,825 + Xcc-8004.752.1 0.64 +1.4
699,825 + Xcc-8004.752.1 0.64 -0.6
699,825 + Xcc-8004.752.1 0.64 -1.3
699,826 - Xcc-8004.752.1 0.64 -2.8
699,826 - Xcc-8004.752.1 0.64 +1.4

Or see this region's nucleotide sequence