Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.726.1 and Xcc-8004.727.1 are separated by 228 nucleotides Xcc-8004.727.1 and Xcc-8004.728.1 overlap by 4 nucleotides Xcc-8004.728.1 and Xcc-8004.729.1 are separated by 46 nucleotides
Xcc-8004.726.1: Xcc-8004.726.1 - Putative preQ0 transporter, at 677,363 to 677,920
Xcc-8004.726.1
Xcc-8004.727.1: Xcc-8004.727.1 - FIG01210864: hypothetical protein, at 678,149 to 678,652
Xcc-8004.727.1
Xcc-8004.728.1: Xcc-8004.728.1 - Putative outer membrane protein, at 678,649 to 679,509
Xcc-8004.728.1
Xcc-8004.729.1: Xcc-8004.729.1 - DUF1022 domain-containing protein, at 679,556 to 680,503
Xcc-8004.729.1
Position (kb) 678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 677.812 kb on - strand, within Xcc-8004.726.1 at 677.972 kb on + strand at 678.011 kb on - strand at 678.090 kb on + strand at 678.091 kb on - strand at 678.150 kb on + strand at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.396 kb on - strand, within Xcc-8004.727.1 at 678.508 kb on - strand, within Xcc-8004.727.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1 at 679.009 kb on - strand, within Xcc-8004.728.1 at 679.035 kb on - strand, within Xcc-8004.728.1 at 679.182 kb on - strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.273 kb on - strand, within Xcc-8004.728.1 at 679.273 kb on - strand, within Xcc-8004.728.1 at 679.273 kb on - strand, within Xcc-8004.728.1 at 679.410 kb on - strand, within Xcc-8004.728.1 at 679.444 kb on + strand at 679.479 kb on - strand at 679.479 kb on - strand at 679.686 kb on + strand, within Xcc-8004.729.1 at 679.686 kb on + strand, within Xcc-8004.729.1 at 679.686 kb on + strand, within Xcc-8004.729.1 at 679.687 kb on - strand, within Xcc-8004.729.1 at 679.687 kb on - strand, within Xcc-8004.729.1 at 679.687 kb on - strand, within Xcc-8004.729.1 at 679.821 kb on + strand, within Xcc-8004.729.1 at 680.066 kb on + strand, within Xcc-8004.729.1 at 680.067 kb on - strand, within Xcc-8004.729.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 677,812 - Xcc-8004.726.1 0.80 -0.9 677,972 + -0.1 678,011 - -1.1 678,090 + -0.1 678,091 - +0.9 678,150 + -0.0 678,323 + Xcc-8004.727.1 0.35 -0.1 678,323 + Xcc-8004.727.1 0.35 +1.0 678,323 + Xcc-8004.727.1 0.35 +0.7 678,324 - Xcc-8004.727.1 0.35 -0.8 678,324 - Xcc-8004.727.1 0.35 +1.3 678,324 - Xcc-8004.727.1 0.35 +2.8 678,324 - Xcc-8004.727.1 0.35 +2.5 678,324 - Xcc-8004.727.1 0.35 +0.3 678,324 - Xcc-8004.727.1 0.35 +1.4 678,396 - Xcc-8004.727.1 0.49 -1.0 678,508 - Xcc-8004.727.1 0.71 +3.3 678,758 + Xcc-8004.728.1 0.13 -0.5 678,758 + Xcc-8004.728.1 0.13 -1.8 678,758 + Xcc-8004.728.1 0.13 +0.5 678,759 - Xcc-8004.728.1 0.13 +0.4 678,759 - Xcc-8004.728.1 0.13 +0.1 678,772 - Xcc-8004.728.1 0.14 -2.8 678,772 - Xcc-8004.728.1 0.14 +3.2 678,837 + Xcc-8004.728.1 0.22 -1.3 678,837 + Xcc-8004.728.1 0.22 +1.6 679,009 - Xcc-8004.728.1 0.42 -0.9 679,035 - Xcc-8004.728.1 0.45 +0.3 679,182 - Xcc-8004.728.1 0.62 -0.2 679,272 + Xcc-8004.728.1 0.72 +1.7 679,272 + Xcc-8004.728.1 0.72 -0.1 679,272 + Xcc-8004.728.1 0.72 +0.2 679,272 + Xcc-8004.728.1 0.72 -1.0 679,272 + Xcc-8004.728.1 0.72 +0.9 679,273 - Xcc-8004.728.1 0.72 -1.9 679,273 - Xcc-8004.728.1 0.72 -3.2 679,273 - Xcc-8004.728.1 0.72 +2.6 679,410 - Xcc-8004.728.1 0.88 +0.0 679,444 + -3.5 679,479 - -2.3 679,479 - -2.3 679,686 + Xcc-8004.729.1 0.14 +0.7 679,686 + Xcc-8004.729.1 0.14 -0.7 679,686 + Xcc-8004.729.1 0.14 +0.2 679,687 - Xcc-8004.729.1 0.14 +2.7 679,687 - Xcc-8004.729.1 0.14 -0.7 679,687 - Xcc-8004.729.1 0.14 -1.8 679,821 + Xcc-8004.729.1 0.28 -0.5 680,066 + Xcc-8004.729.1 0.54 +0.7 680,067 - Xcc-8004.729.1 0.54 -0.3
Or see this region's nucleotide sequence