Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.724.1 and Xcc-8004.726.1 are separated by 563 nucleotides Xcc-8004.726.1 and Xcc-8004.727.1 are separated by 228 nucleotides Xcc-8004.727.1 and Xcc-8004.728.1 overlap by 4 nucleotides
Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799
Xcc-8004.724.1
Xcc-8004.726.1: Xcc-8004.726.1 - Putative preQ0 transporter, at 677,363 to 677,920
Xcc-8004.726.1
Xcc-8004.727.1: Xcc-8004.727.1 - FIG01210864: hypothetical protein, at 678,149 to 678,652
Xcc-8004.727.1
Xcc-8004.728.1: Xcc-8004.728.1 - Putative outer membrane protein, at 678,649 to 679,509
Xcc-8004.728.1
Position (kb) 677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.601 kb on + strand, within Xcc-8004.724.1 at 676.811 kb on + strand at 676.811 kb on + strand at 676.864 kb on + strand at 676.877 kb on - strand at 676.890 kb on + strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.894 kb on + strand at 676.894 kb on + strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.897 kb on + strand at 676.915 kb on - strand at 677.046 kb on + strand at 677.080 kb on - strand at 677.153 kb on - strand at 677.153 kb on - strand at 677.163 kb on + strand at 677.163 kb on + strand at 677.256 kb on + strand at 677.328 kb on + strand at 677.812 kb on - strand, within Xcc-8004.726.1 at 677.972 kb on + strand at 678.011 kb on - strand at 678.090 kb on + strand at 678.091 kb on - strand at 678.150 kb on + strand at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.396 kb on - strand, within Xcc-8004.727.1 at 678.508 kb on - strand, within Xcc-8004.727.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 676,520 - Xcc-8004.724.1 0.82 +1.0 676,520 - Xcc-8004.724.1 0.82 +0.1 676,601 + Xcc-8004.724.1 0.87 +0.5 676,811 + +1.3 676,811 + +0.5 676,864 + +0.8 676,877 - +0.5 676,890 + +0.7 676,891 - -0.6 676,891 - -1.9 676,891 - +0.8 676,894 + +1.9 676,894 + -0.8 676,895 - +1.3 676,895 - +0.9 676,895 - +1.3 676,897 + -2.0 676,915 - -0.5 677,046 + -2.3 677,080 - +1.1 677,153 - +1.0 677,153 - -2.9 677,163 + -2.2 677,163 + -3.1 677,256 + +0.2 677,328 + -1.9 677,812 - Xcc-8004.726.1 0.80 -0.9 677,972 + -0.1 678,011 - -1.1 678,090 + -0.1 678,091 - +0.9 678,150 + -0.0 678,323 + Xcc-8004.727.1 0.35 -0.1 678,323 + Xcc-8004.727.1 0.35 +1.0 678,323 + Xcc-8004.727.1 0.35 +0.7 678,324 - Xcc-8004.727.1 0.35 -0.8 678,324 - Xcc-8004.727.1 0.35 +1.3 678,324 - Xcc-8004.727.1 0.35 +2.8 678,324 - Xcc-8004.727.1 0.35 +2.5 678,324 - Xcc-8004.727.1 0.35 +0.3 678,324 - Xcc-8004.727.1 0.35 +1.4 678,396 - Xcc-8004.727.1 0.49 -1.0 678,508 - Xcc-8004.727.1 0.71 +3.3 678,758 + Xcc-8004.728.1 0.13 -0.5 678,758 + Xcc-8004.728.1 0.13 -1.8 678,758 + Xcc-8004.728.1 0.13 +0.5 678,759 - Xcc-8004.728.1 0.13 +0.4 678,759 - Xcc-8004.728.1 0.13 +0.1 678,772 - Xcc-8004.728.1 0.14 -2.8 678,772 - Xcc-8004.728.1 0.14 +3.2 678,837 + Xcc-8004.728.1 0.22 -1.3 678,837 + Xcc-8004.728.1 0.22 +1.6
Or see this region's nucleotide sequence