Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.589.1 and Xcc-8004.590.1 are separated by 47 nucleotides Xcc-8004.590.1 and Xcc-8004.591.1 are separated by 47 nucleotides Xcc-8004.591.1 and Xcc-8004.593.1 are separated by 410 nucleotides
Xcc-8004.589.1: Xcc-8004.589.1 - hypothetical protein, at 544,881 to 547,709
Xcc-8004.589.1
Xcc-8004.590.1: Xcc-8004.590.1 - FIG01210288: hypothetical protein, at 547,757 to 548,776
Xcc-8004.590.1
Xcc-8004.591.1: Xcc-8004.591.1 - FIG01209882: hypothetical protein, at 548,824 to 549,309
Xcc-8004.591.1
Xcc-8004.593.1: Xcc-8004.593.1 - hypothetical protein, at 549,720 to 549,977
Xcc-8004.593.1
Position (kb) 547
548
549 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 547.747 kb on + strand at 547.762 kb on + strand at 547.763 kb on - strand at 547.840 kb on + strand at 547.840 kb on + strand at 547.841 kb on - strand at 547.841 kb on - strand at 547.868 kb on + strand, within Xcc-8004.590.1 at 547.869 kb on - strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.324 kb on + strand, within Xcc-8004.590.1 at 548.325 kb on - strand, within Xcc-8004.590.1 at 548.495 kb on + strand, within Xcc-8004.590.1 at 548.496 kb on - strand, within Xcc-8004.590.1 at 548.525 kb on + strand, within Xcc-8004.590.1 at 548.525 kb on + strand, within Xcc-8004.590.1 at 548.526 kb on - strand, within Xcc-8004.590.1 at 548.579 kb on + strand, within Xcc-8004.590.1 at 548.724 kb on - strand at 548.774 kb on + strand at 548.775 kb on - strand at 548.849 kb on + strand at 548.849 kb on + strand at 548.850 kb on - strand at 548.850 kb on - strand at 548.850 kb on - strand at 548.850 kb on - strand at 548.888 kb on + strand, within Xcc-8004.591.1 at 548.888 kb on + strand, within Xcc-8004.591.1 at 548.888 kb on + strand, within Xcc-8004.591.1 at 548.889 kb on - strand, within Xcc-8004.591.1 at 549.092 kb on + strand, within Xcc-8004.591.1 at 549.092 kb on + strand, within Xcc-8004.591.1 at 549.092 kb on + strand, within Xcc-8004.591.1 at 549.092 kb on + strand, within Xcc-8004.591.1 at 549.092 kb on + strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.093 kb on - strand, within Xcc-8004.591.1 at 549.095 kb on + strand, within Xcc-8004.591.1 at 549.095 kb on + strand, within Xcc-8004.591.1 at 549.095 kb on + strand, within Xcc-8004.591.1 at 549.095 kb on + strand, within Xcc-8004.591.1 at 549.095 kb on + strand, within Xcc-8004.591.1 at 549.095 kb on + strand, within Xcc-8004.591.1 at 549.096 kb on - strand, within Xcc-8004.591.1 at 549.096 kb on - strand, within Xcc-8004.591.1 at 549.096 kb on - strand, within Xcc-8004.591.1 at 549.096 kb on - strand, within Xcc-8004.591.1 at 549.096 kb on - strand, within Xcc-8004.591.1 at 549.096 kb on - strand, within Xcc-8004.591.1 at 549.096 kb on - strand, within Xcc-8004.591.1 at 549.257 kb on + strand, within Xcc-8004.591.1 at 549.269 kb on + strand at 549.562 kb on - strand at 549.562 kb on - strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.635 kb on + strand at 549.636 kb on - strand at 549.684 kb on + strand at 549.685 kb on - strand at 549.704 kb on + strand at 549.704 kb on + strand at 549.775 kb on + strand, within Xcc-8004.593.1 at 549.775 kb on + strand, within Xcc-8004.593.1 at 549.776 kb on - strand, within Xcc-8004.593.1 at 549.776 kb on - strand, within Xcc-8004.593.1 at 549.776 kb on - strand, within Xcc-8004.593.1 at 549.776 kb on - strand, within Xcc-8004.593.1 at 549.776 kb on - strand, within Xcc-8004.593.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 547,747 + -0.6 547,762 + -0.8 547,763 - -0.4 547,840 + +4.3 547,840 + -0.4 547,841 - +3.5 547,841 - +1.4 547,868 + Xcc-8004.590.1 0.11 +2.4 547,869 - Xcc-8004.590.1 0.11 +0.1 548,324 + Xcc-8004.590.1 0.56 -1.5 548,324 + Xcc-8004.590.1 0.56 -0.7 548,324 + Xcc-8004.590.1 0.56 +0.8 548,325 - Xcc-8004.590.1 0.56 -0.1 548,495 + Xcc-8004.590.1 0.72 +1.0 548,496 - Xcc-8004.590.1 0.72 -0.2 548,525 + Xcc-8004.590.1 0.75 +1.4 548,525 + Xcc-8004.590.1 0.75 +1.6 548,526 - Xcc-8004.590.1 0.75 +4.7 548,579 + Xcc-8004.590.1 0.81 +3.0 548,724 - -1.7 548,774 + -2.4 548,775 - -0.6 548,849 + +0.5 548,849 + +0.4 548,850 - -2.3 548,850 - -2.1 548,850 - -1.0 548,850 - +1.9 548,888 + Xcc-8004.591.1 0.13 -0.6 548,888 + Xcc-8004.591.1 0.13 +0.0 548,888 + Xcc-8004.591.1 0.13 +0.4 548,889 - Xcc-8004.591.1 0.13 +0.1 549,092 + Xcc-8004.591.1 0.55 -2.0 549,092 + Xcc-8004.591.1 0.55 +2.3 549,092 + Xcc-8004.591.1 0.55 -1.3 549,092 + Xcc-8004.591.1 0.55 +2.3 549,092 + Xcc-8004.591.1 0.55 +1.8 549,093 - Xcc-8004.591.1 0.55 +1.0 549,093 - Xcc-8004.591.1 0.55 +0.2 549,093 - Xcc-8004.591.1 0.55 +0.6 549,093 - Xcc-8004.591.1 0.55 +0.0 549,093 - Xcc-8004.591.1 0.55 +0.5 549,093 - Xcc-8004.591.1 0.55 +2.3 549,093 - Xcc-8004.591.1 0.55 +0.2 549,093 - Xcc-8004.591.1 0.55 -0.3 549,093 - Xcc-8004.591.1 0.55 +0.6 549,095 + Xcc-8004.591.1 0.56 +1.7 549,095 + Xcc-8004.591.1 0.56 -1.2 549,095 + Xcc-8004.591.1 0.56 -0.0 549,095 + Xcc-8004.591.1 0.56 +1.2 549,095 + Xcc-8004.591.1 0.56 +1.1 549,095 + Xcc-8004.591.1 0.56 -1.2 549,096 - Xcc-8004.591.1 0.56 +0.2 549,096 - Xcc-8004.591.1 0.56 +1.0 549,096 - Xcc-8004.591.1 0.56 +0.8 549,096 - Xcc-8004.591.1 0.56 -1.9 549,096 - Xcc-8004.591.1 0.56 -4.4 549,096 - Xcc-8004.591.1 0.56 +0.0 549,096 - Xcc-8004.591.1 0.56 +1.4 549,257 + Xcc-8004.591.1 0.89 -2.3 549,269 + +1.0 549,562 - -0.3 549,562 - -2.4 549,635 + +0.8 549,635 + +0.0 549,635 + +1.2 549,635 + -0.2 549,635 + -0.1 549,635 + -0.9 549,636 - -1.3 549,684 + -2.2 549,685 - -0.6 549,704 + -1.4 549,704 + +0.0 549,775 + Xcc-8004.593.1 0.21 -0.7 549,775 + Xcc-8004.593.1 0.21 -1.7 549,776 - Xcc-8004.593.1 0.22 -0.5 549,776 - Xcc-8004.593.1 0.22 +0.4 549,776 - Xcc-8004.593.1 0.22 +0.3 549,776 - Xcc-8004.593.1 0.22 -0.5 549,776 - Xcc-8004.593.1 0.22 -2.2
Or see this region's nucleotide sequence