Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.544.1 and Xcc-8004.545.1 are separated by 16 nucleotides Xcc-8004.545.1 and Xcc-8004.551.1 are separated by 844 nucleotides
Xcc-8004.544.1: Xcc-8004.544.1 - Glycogen debranching enzyme (EC 3.2.1.-), at 504,519 to 506,681
Xcc-8004.544.1
Xcc-8004.545.1: Xcc-8004.545.1 - Nucleoside-diphosphate-sugar epimerases, at 506,698 to 507,330
Xcc-8004.545.1
Xcc-8004.551.1: Xcc-8004.551.1 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 508,175 to 508,933
Xcc-8004.551.1
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 505.705 kb on - strand, within Xcc-8004.544.1 at 505.923 kb on + strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.982 kb on + strand, within Xcc-8004.544.1 at 505.982 kb on + strand, within Xcc-8004.544.1 at 505.983 kb on - strand, within Xcc-8004.544.1 at 505.983 kb on - strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 506.126 kb on + strand, within Xcc-8004.544.1 at 506.151 kb on + strand, within Xcc-8004.544.1 at 506.151 kb on + strand, within Xcc-8004.544.1 at 507.058 kb on + strand, within Xcc-8004.545.1 at 507.059 kb on - strand, within Xcc-8004.545.1 at 507.424 kb on + strand at 507.831 kb on - strand at 507.895 kb on - strand at 507.895 kb on - strand at 508.002 kb on + strand at 508.067 kb on - strand at 508.253 kb on + strand, within Xcc-8004.551.1 at 508.270 kb on + strand, within Xcc-8004.551.1 at 508.323 kb on + strand, within Xcc-8004.551.1 at 508.323 kb on + strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1 at 508.324 kb on - strand, within Xcc-8004.551.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 505,705 - Xcc-8004.544.1 0.55 +0.4 505,923 + Xcc-8004.544.1 0.65 -1.0 505,924 - Xcc-8004.544.1 0.65 -2.4 505,924 - Xcc-8004.544.1 0.65 -0.6 505,924 - Xcc-8004.544.1 0.65 -0.6 505,982 + Xcc-8004.544.1 0.68 -1.1 505,982 + Xcc-8004.544.1 0.68 -1.5 505,983 - Xcc-8004.544.1 0.68 +0.2 505,983 - Xcc-8004.544.1 0.68 -1.5 505,995 + Xcc-8004.544.1 0.68 +0.2 505,995 + Xcc-8004.544.1 0.68 -0.1 505,995 + Xcc-8004.544.1 0.68 +0.8 506,126 + Xcc-8004.544.1 0.74 -2.3 506,151 + Xcc-8004.544.1 0.75 -0.2 506,151 + Xcc-8004.544.1 0.75 -1.4 507,058 + Xcc-8004.545.1 0.57 +1.0 507,059 - Xcc-8004.545.1 0.57 +2.8 507,424 + +1.3 507,831 - +0.5 507,895 - +2.0 507,895 - +0.6 508,002 + -1.0 508,067 - -1.0 508,253 + Xcc-8004.551.1 0.10 +1.2 508,270 + Xcc-8004.551.1 0.13 +3.0 508,323 + Xcc-8004.551.1 0.19 -0.0 508,323 + Xcc-8004.551.1 0.19 -1.3 508,324 - Xcc-8004.551.1 0.20 -0.1 508,324 - Xcc-8004.551.1 0.20 -2.4 508,324 - Xcc-8004.551.1 0.20 -0.6 508,324 - Xcc-8004.551.1 0.20 +1.0
Or see this region's nucleotide sequence