Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5186.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5184.1 and Xcc-8004.5185.1 are separated by 155 nucleotidesXcc-8004.5185.1 and Xcc-8004.5186.1 are separated by 284 nucleotidesXcc-8004.5186.1 and Xcc-8004.5188.1 are separated by 170 nucleotides Xcc-8004.5184.1: Xcc-8004.5184.1 - sodium:galactoside family symporter, at 4,918,750 to 4,920,132 Xcc-8004.5184.1 Xcc-8004.5185.1: Xcc-8004.5185.1 - Gluconokinase (EC 2.7.1.12), at 4,920,288 to 4,920,830 Xcc-8004.5185.1 Xcc-8004.5186.1: Xcc-8004.5186.1 - hypothetical protein, at 4,921,115 to 4,921,450 Xcc-8004.5186.1 Xcc-8004.5188.1: Xcc-8004.5188.1 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 4,921,621 to 4,923,348 Xcc-8004.5188.1 Position (kb) 4921 4922Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4920.215 kb on + strandat 4920.215 kb on + strandat 4920.216 kb on - strandat 4920.216 kb on - strandat 4920.277 kb on + strandat 4920.277 kb on + strandat 4920.277 kb on + strandat 4920.277 kb on + strandat 4920.278 kb on - strandat 4920.278 kb on - strandat 4920.278 kb on - strandat 4920.278 kb on - strandat 4920.278 kb on - strandat 4920.279 kb on + strandat 4920.279 kb on + strandat 4920.279 kb on + strandat 4920.279 kb on + strandat 4920.279 kb on + strandat 4920.279 kb on + strandat 4920.279 kb on + strandat 4920.280 kb on - strandat 4920.280 kb on - strandat 4920.280 kb on - strandat 4920.280 kb on - strandat 4920.280 kb on - strandat 4920.403 kb on - strand, within Xcc-8004.5185.1at 4920.432 kb on + strand, within Xcc-8004.5185.1at 4920.433 kb on - strand, within Xcc-8004.5185.1at 4920.505 kb on + strand, within Xcc-8004.5185.1at 4920.506 kb on - strand, within Xcc-8004.5185.1at 4920.969 kb on + strandat 4920.970 kb on - strandat 4920.970 kb on - strandat 4920.991 kb on + strandat 4921.148 kb on + strandat 4921.148 kb on + strandat 4921.152 kb on + strand, within Xcc-8004.5186.1at 4921.153 kb on - strand, within Xcc-8004.5186.1at 4921.339 kb on + strand, within Xcc-8004.5186.1at 4921.340 kb on - strand, within Xcc-8004.5186.1at 4921.340 kb on - strand, within Xcc-8004.5186.1at 4921.340 kb on - strand, within Xcc-8004.5186.1at 4921.348 kb on + strand, within Xcc-8004.5186.1at 4921.401 kb on + strand, within Xcc-8004.5186.1at 4921.448 kb on + strandat 4921.483 kb on + strandat 4921.484 kb on - strandat 4921.486 kb on + strandat 4921.486 kb on + strandat 4921.487 kb on - strandat 4921.487 kb on - strandat 4921.487 kb on - strandat 4921.816 kb on - strand, within Xcc-8004.5188.1at 4921.816 kb on - strand, within Xcc-8004.5188.1at 4921.816 kb on - strand, within Xcc-8004.5188.1at 4921.841 kb on - strand, within Xcc-8004.5188.1at 4921.956 kb on - strand, within Xcc-8004.5188.1at 4921.956 kb on - strand, within Xcc-8004.5188.1at 4921.956 kb on - strand, within Xcc-8004.5188.1at 4921.972 kb on + strand, within Xcc-8004.5188.1at 4921.972 kb on + strand, within Xcc-8004.5188.1at 4921.973 kb on - strand, within Xcc-8004.5188.1at 4921.973 kb on - strand, within Xcc-8004.5188.1at 4921.973 kb on - strand, within Xcc-8004.5188.1at 4921.999 kb on + strand, within Xcc-8004.5188.1at 4921.999 kb on + strand, within Xcc-8004.5188.1at 4922.000 kb on - strand, within Xcc-8004.5188.1at 4922.000 kb on - strand, within Xcc-8004.5188.1at 4922.000 kb on - strand, within Xcc-8004.5188.1at 4922.000 kb on - strand, within Xcc-8004.5188.1at 4922.001 kb on + strand, within Xcc-8004.5188.1at 4922.002 kb on - strand, within Xcc-8004.5188.1at 4922.085 kb on + strand, within Xcc-8004.5188.1at 4922.085 kb on + strand, within Xcc-8004.5188.1at 4922.086 kb on - strand, within Xcc-8004.5188.1at 4922.086 kb on - strand, within Xcc-8004.5188.1at 4922.233 kb on + strand, within Xcc-8004.5188.1at 4922.234 kb on - strand, within Xcc-8004.5188.1at 4922.244 kb on + strand, within Xcc-8004.5188.1at 4922.244 kb on + strand, within Xcc-8004.5188.1at 4922.244 kb on + strand, within Xcc-8004.5188.1at 4922.245 kb on - strand, within Xcc-8004.5188.1at 4922.245 kb on - strand, within Xcc-8004.5188.1at 4922.245 kb on - strand, within Xcc-8004.5188.1at 4922.248 kb on + strand, within Xcc-8004.5188.1at 4922.248 kb on + strand, within Xcc-8004.5188.1at 4922.248 kb on + strand, within Xcc-8004.5188.1at 4922.249 kb on - strand, within Xcc-8004.5188.1at 4922.249 kb on - strand, within Xcc-8004.5188.1at 4922.249 kb on - strand, within Xcc-8004.5188.1at 4922.295 kb on + strand, within Xcc-8004.5188.1at 4922.295 kb on + strand, within Xcc-8004.5188.1at 4922.295 kb on + strand, within Xcc-8004.5188.1at 4922.295 kb on + strand, within Xcc-8004.5188.1at 4922.296 kb on - strand, within Xcc-8004.5188.1at 4922.362 kb on + strand, within Xcc-8004.5188.1at 4922.362 kb on + strand, within Xcc-8004.5188.1at 4922.362 kb on + strand, within Xcc-8004.5188.1at 4922.363 kb on - strand, within Xcc-8004.5188.1at 4922.363 kb on - strand, within Xcc-8004.5188.1at 4922.363 kb on - strand, within Xcc-8004.5188.1at 4922.380 kb on + strand, within Xcc-8004.5188.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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4,920,215 + +2.2
4,920,215 + -1.6
4,920,216 - -1.4
4,920,216 - -2.1
4,920,277 + +0.3
4,920,277 + +0.4
4,920,277 + -0.6
4,920,277 + -1.0
4,920,278 - +0.9
4,920,278 - -1.1
4,920,278 - -0.8
4,920,278 - +0.2
4,920,278 - -0.2
4,920,279 + -0.9
4,920,279 + -0.3
4,920,279 + -0.5
4,920,279 + -1.0
4,920,279 + +1.8
4,920,279 + -0.4
4,920,279 + -1.7
4,920,280 - +0.8
4,920,280 - +2.3
4,920,280 - -1.7
4,920,280 - -2.6
4,920,280 - -3.2
4,920,403 - Xcc-8004.5185.1 0.21 -1.7
4,920,432 + Xcc-8004.5185.1 0.27 +0.3
4,920,433 - Xcc-8004.5185.1 0.27 -2.9
4,920,505 + Xcc-8004.5185.1 0.40 +1.2
4,920,506 - Xcc-8004.5185.1 0.40 -1.3
4,920,969 + +0.8
4,920,970 - -0.1
4,920,970 - -3.0
4,920,991 + +0.3
4,921,148 + -1.0
4,921,148 + +0.6
4,921,152 + Xcc-8004.5186.1 0.11 -1.7
4,921,153 - Xcc-8004.5186.1 0.11 -0.5
4,921,339 + Xcc-8004.5186.1 0.67 +0.7
4,921,340 - Xcc-8004.5186.1 0.67 -3.1
4,921,340 - Xcc-8004.5186.1 0.67 +0.1
4,921,340 - Xcc-8004.5186.1 0.67 -0.3
4,921,348 + Xcc-8004.5186.1 0.69 -0.8
4,921,401 + Xcc-8004.5186.1 0.85 +1.2
4,921,448 + -0.7
4,921,483 + -0.2
4,921,484 - -0.4
4,921,486 + -1.7
4,921,486 + +0.5
4,921,487 - +5.8
4,921,487 - -3.0
4,921,487 - +0.5
4,921,816 - Xcc-8004.5188.1 0.11 +0.9
4,921,816 - Xcc-8004.5188.1 0.11 +1.7
4,921,816 - Xcc-8004.5188.1 0.11 -0.9
4,921,841 - Xcc-8004.5188.1 0.13 +1.1
4,921,956 - Xcc-8004.5188.1 0.19 -1.5
4,921,956 - Xcc-8004.5188.1 0.19 -3.2
4,921,956 - Xcc-8004.5188.1 0.19 -0.4
4,921,972 + Xcc-8004.5188.1 0.20 +1.0
4,921,972 + Xcc-8004.5188.1 0.20 -1.3
4,921,973 - Xcc-8004.5188.1 0.20 -1.8
4,921,973 - Xcc-8004.5188.1 0.20 -0.1
4,921,973 - Xcc-8004.5188.1 0.20 -0.3
4,921,999 + Xcc-8004.5188.1 0.22 +1.0
4,921,999 + Xcc-8004.5188.1 0.22 +1.5
4,922,000 - Xcc-8004.5188.1 0.22 -0.0
4,922,000 - Xcc-8004.5188.1 0.22 -0.8
4,922,000 - Xcc-8004.5188.1 0.22 +0.9
4,922,000 - Xcc-8004.5188.1 0.22 -0.1
4,922,001 + Xcc-8004.5188.1 0.22 +0.2
4,922,002 - Xcc-8004.5188.1 0.22 +0.5
4,922,085 + Xcc-8004.5188.1 0.27 -1.7
4,922,085 + Xcc-8004.5188.1 0.27 -2.8
4,922,086 - Xcc-8004.5188.1 0.27 -2.0
4,922,086 - Xcc-8004.5188.1 0.27 +0.8
4,922,233 + Xcc-8004.5188.1 0.35 +0.9
4,922,234 - Xcc-8004.5188.1 0.35 -0.3
4,922,244 + Xcc-8004.5188.1 0.36 +1.5
4,922,244 + Xcc-8004.5188.1 0.36 +2.4
4,922,244 + Xcc-8004.5188.1 0.36 +0.9
4,922,245 - Xcc-8004.5188.1 0.36 +0.0
4,922,245 - Xcc-8004.5188.1 0.36 +1.1
4,922,245 - Xcc-8004.5188.1 0.36 -0.6
4,922,248 + Xcc-8004.5188.1 0.36 -2.2
4,922,248 + Xcc-8004.5188.1 0.36 -3.3
4,922,248 + Xcc-8004.5188.1 0.36 +0.3
4,922,249 - Xcc-8004.5188.1 0.36 -2.3
4,922,249 - Xcc-8004.5188.1 0.36 +0.9
4,922,249 - Xcc-8004.5188.1 0.36 -2.3
4,922,295 + Xcc-8004.5188.1 0.39 -3.4
4,922,295 + Xcc-8004.5188.1 0.39 -0.7
4,922,295 + Xcc-8004.5188.1 0.39 -0.7
4,922,295 + Xcc-8004.5188.1 0.39 +0.3
4,922,296 - Xcc-8004.5188.1 0.39 +0.7
4,922,362 + Xcc-8004.5188.1 0.43 -0.1
4,922,362 + Xcc-8004.5188.1 0.43 -0.2
4,922,362 + Xcc-8004.5188.1 0.43 -1.4
4,922,363 - Xcc-8004.5188.1 0.43 -3.3
4,922,363 - Xcc-8004.5188.1 0.43 -2.8
4,922,363 - Xcc-8004.5188.1 0.43 -0.1
4,922,380 + Xcc-8004.5188.1 0.44 -2.4

Or see this region's nucleotide sequence