Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5116.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5115.1 and Xcc-8004.5116.1 are separated by 171 nucleotidesXcc-8004.5116.1 and Xcc-8004.5117.1 are separated by 9 nucleotides Xcc-8004.5115.1: Xcc-8004.5115.1 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 4,849,205 to 4,850,731 Xcc-8004.5115.1 Xcc-8004.5116.1: Xcc-8004.5116.1 - Cardiolipin synthetase (EC 2.7.8.-), at 4,850,903 to 4,852,327 Xcc-8004.5116.1 Xcc-8004.5117.1: Xcc-8004.5117.1 - Transcriptional regulator, LysR family, at 4,852,337 to 4,853,599 Xcc-8004.5117.1 Position (kb) 4850 4851 4852 4853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.352 kb on + strand, within Xcc-8004.5115.1at 4850.353 kb on - strand, within Xcc-8004.5115.1at 4850.353 kb on - strand, within Xcc-8004.5115.1at 4850.440 kb on - strand, within Xcc-8004.5115.1at 4850.440 kb on - strand, within Xcc-8004.5115.1at 4850.607 kb on + strandat 4850.608 kb on - strandat 4850.784 kb on + strandat 4850.784 kb on + strandat 4850.784 kb on + strandat 4850.785 kb on - strandat 4850.785 kb on - strandat 4850.785 kb on - strandat 4850.817 kb on + strandat 4851.006 kb on + strandat 4851.006 kb on + strandat 4851.007 kb on - strandat 4851.032 kb on + strandat 4851.033 kb on - strandat 4851.051 kb on + strand, within Xcc-8004.5116.1at 4851.051 kb on + strand, within Xcc-8004.5116.1at 4851.171 kb on + strand, within Xcc-8004.5116.1at 4851.213 kb on + strand, within Xcc-8004.5116.1at 4851.337 kb on - strand, within Xcc-8004.5116.1at 4851.337 kb on - strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.460 kb on - strand, within Xcc-8004.5116.1at 4851.557 kb on + strand, within Xcc-8004.5116.1at 4851.557 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.886 kb on - strand, within Xcc-8004.5116.1at 4851.886 kb on - strand, within Xcc-8004.5116.1at 4851.886 kb on - strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.954 kb on + strand, within Xcc-8004.5116.1at 4851.954 kb on + strand, within Xcc-8004.5116.1at 4851.955 kb on - strand, within Xcc-8004.5116.1at 4852.124 kb on + strand, within Xcc-8004.5116.1at 4852.124 kb on + strand, within Xcc-8004.5116.1at 4852.124 kb on + strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.371 kb on - strandat 4852.637 kb on + strand, within Xcc-8004.5117.1at 4852.638 kb on - strand, within Xcc-8004.5117.1at 4852.764 kb on + strand, within Xcc-8004.5117.1at 4852.764 kb on + strand, within Xcc-8004.5117.1at 4852.765 kb on - strand, within Xcc-8004.5117.1at 4852.789 kb on - strand, within Xcc-8004.5117.1at 4852.847 kb on + strand, within Xcc-8004.5117.1at 4852.848 kb on - strand, within Xcc-8004.5117.1at 4853.008 kb on + strand, within Xcc-8004.5117.1at 4853.008 kb on + strand, within Xcc-8004.5117.1at 4853.008 kb on + strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.021 kb on + strand, within Xcc-8004.5117.1at 4853.022 kb on - strand, within Xcc-8004.5117.1at 4853.235 kb on + strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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4,850,277 + Xcc-8004.5115.1 0.70 +0.0
4,850,277 + Xcc-8004.5115.1 0.70 -1.0
4,850,277 + Xcc-8004.5115.1 0.70 +1.2
4,850,277 + Xcc-8004.5115.1 0.70 +0.2
4,850,277 + Xcc-8004.5115.1 0.70 +0.6
4,850,277 + Xcc-8004.5115.1 0.70 -0.5
4,850,277 + Xcc-8004.5115.1 0.70 +0.1
4,850,277 + Xcc-8004.5115.1 0.70 -2.7
4,850,278 - Xcc-8004.5115.1 0.70 -0.8
4,850,278 - Xcc-8004.5115.1 0.70 +0.3
4,850,278 - Xcc-8004.5115.1 0.70 -1.5
4,850,278 - Xcc-8004.5115.1 0.70 +1.1
4,850,279 + Xcc-8004.5115.1 0.70 +1.3
4,850,279 + Xcc-8004.5115.1 0.70 +0.2
4,850,279 + Xcc-8004.5115.1 0.70 +1.8
4,850,279 + Xcc-8004.5115.1 0.70 -0.7
4,850,279 + Xcc-8004.5115.1 0.70 +0.1
4,850,279 + Xcc-8004.5115.1 0.70 -1.5
4,850,279 + Xcc-8004.5115.1 0.70 +1.6
4,850,279 + Xcc-8004.5115.1 0.70 +1.2
4,850,279 + Xcc-8004.5115.1 0.70 +1.2
4,850,279 + Xcc-8004.5115.1 0.70 -2.3
4,850,280 - Xcc-8004.5115.1 0.70 -0.3
4,850,280 - Xcc-8004.5115.1 0.70 +0.2
4,850,280 - Xcc-8004.5115.1 0.70 -2.8
4,850,280 - Xcc-8004.5115.1 0.70 -2.8
4,850,280 - Xcc-8004.5115.1 0.70 +2.3
4,850,280 - Xcc-8004.5115.1 0.70 +0.0
4,850,280 - Xcc-8004.5115.1 0.70 +0.4
4,850,280 - Xcc-8004.5115.1 0.70 -0.3
4,850,280 - Xcc-8004.5115.1 0.70 -0.1
4,850,280 - Xcc-8004.5115.1 0.70 -2.8
4,850,280 - Xcc-8004.5115.1 0.70 +0.5
4,850,280 - Xcc-8004.5115.1 0.70 +1.2
4,850,352 + Xcc-8004.5115.1 0.75 +3.5
4,850,353 - Xcc-8004.5115.1 0.75 +1.7
4,850,353 - Xcc-8004.5115.1 0.75 -2.6
4,850,440 - Xcc-8004.5115.1 0.81 +0.7
4,850,440 - Xcc-8004.5115.1 0.81 +0.5
4,850,607 + -0.1
4,850,608 - +0.2
4,850,784 + +0.8
4,850,784 + -0.5
4,850,784 + -1.1
4,850,785 - -1.1
4,850,785 - -0.9
4,850,785 - +1.0
4,850,817 + -1.7
4,851,006 + -1.6
4,851,006 + +0.7
4,851,007 - +1.4
4,851,032 + +1.4
4,851,033 - -0.1
4,851,051 + Xcc-8004.5116.1 0.10 +1.5
4,851,051 + Xcc-8004.5116.1 0.10 -2.3
4,851,171 + Xcc-8004.5116.1 0.19 -0.4
4,851,213 + Xcc-8004.5116.1 0.22 -0.1
4,851,337 - Xcc-8004.5116.1 0.30 -0.4
4,851,337 - Xcc-8004.5116.1 0.30 -3.1
4,851,459 + Xcc-8004.5116.1 0.39 +2.4
4,851,459 + Xcc-8004.5116.1 0.39 +0.3
4,851,459 + Xcc-8004.5116.1 0.39 +0.4
4,851,460 - Xcc-8004.5116.1 0.39 -1.7
4,851,557 + Xcc-8004.5116.1 0.46 +0.2
4,851,557 + Xcc-8004.5116.1 0.46 +1.8
4,851,885 + Xcc-8004.5116.1 0.69 +1.0
4,851,885 + Xcc-8004.5116.1 0.69 +0.8
4,851,885 + Xcc-8004.5116.1 0.69 +0.3
4,851,885 + Xcc-8004.5116.1 0.69 +0.5
4,851,885 + Xcc-8004.5116.1 0.69 -1.9
4,851,886 - Xcc-8004.5116.1 0.69 -1.8
4,851,886 - Xcc-8004.5116.1 0.69 +1.3
4,851,886 - Xcc-8004.5116.1 0.69 -0.6
4,851,888 + Xcc-8004.5116.1 0.69 -2.1
4,851,888 + Xcc-8004.5116.1 0.69 -1.0
4,851,888 + Xcc-8004.5116.1 0.69 -0.8
4,851,888 + Xcc-8004.5116.1 0.69 +1.1
4,851,888 + Xcc-8004.5116.1 0.69 +0.9
4,851,889 - Xcc-8004.5116.1 0.69 -0.3
4,851,889 - Xcc-8004.5116.1 0.69 -1.4
4,851,889 - Xcc-8004.5116.1 0.69 -2.8
4,851,889 - Xcc-8004.5116.1 0.69 +3.3
4,851,889 - Xcc-8004.5116.1 0.69 +0.7
4,851,889 - Xcc-8004.5116.1 0.69 +0.3
4,851,889 - Xcc-8004.5116.1 0.69 -0.8
4,851,954 + Xcc-8004.5116.1 0.74 -0.4
4,851,954 + Xcc-8004.5116.1 0.74 +1.1
4,851,955 - Xcc-8004.5116.1 0.74 +0.1
4,852,124 + Xcc-8004.5116.1 0.86 -3.6
4,852,124 + Xcc-8004.5116.1 0.86 -2.8
4,852,124 + Xcc-8004.5116.1 0.86 -3.3
4,852,125 - Xcc-8004.5116.1 0.86 -1.0
4,852,125 - Xcc-8004.5116.1 0.86 +0.8
4,852,125 - Xcc-8004.5116.1 0.86 -1.2
4,852,125 - Xcc-8004.5116.1 0.86 -0.8
4,852,164 + Xcc-8004.5116.1 0.88 -1.6
4,852,164 + Xcc-8004.5116.1 0.88 -1.0
4,852,164 + Xcc-8004.5116.1 0.88 +0.8
4,852,164 + Xcc-8004.5116.1 0.88 -2.3
4,852,165 - Xcc-8004.5116.1 0.89 -0.8
4,852,165 - Xcc-8004.5116.1 0.89 +0.3
4,852,165 - Xcc-8004.5116.1 0.89 -1.0
4,852,165 - Xcc-8004.5116.1 0.89 +0.4
4,852,165 - Xcc-8004.5116.1 0.89 -0.8
4,852,371 - +0.9
4,852,637 + Xcc-8004.5117.1 0.24 +0.4
4,852,638 - Xcc-8004.5117.1 0.24 -0.1
4,852,764 + Xcc-8004.5117.1 0.34 +0.5
4,852,764 + Xcc-8004.5117.1 0.34 -2.4
4,852,765 - Xcc-8004.5117.1 0.34 +0.6
4,852,789 - Xcc-8004.5117.1 0.36 -1.6
4,852,847 + Xcc-8004.5117.1 0.40 -2.8
4,852,848 - Xcc-8004.5117.1 0.40 +0.5
4,853,008 + Xcc-8004.5117.1 0.53 +0.7
4,853,008 + Xcc-8004.5117.1 0.53 +2.9
4,853,008 + Xcc-8004.5117.1 0.53 -3.3
4,853,009 - Xcc-8004.5117.1 0.53 -1.8
4,853,009 - Xcc-8004.5117.1 0.53 +0.9
4,853,009 - Xcc-8004.5117.1 0.53 +0.5
4,853,009 - Xcc-8004.5117.1 0.53 +2.4
4,853,009 - Xcc-8004.5117.1 0.53 +0.3
4,853,021 + Xcc-8004.5117.1 0.54 -3.7
4,853,022 - Xcc-8004.5117.1 0.54 -2.2
4,853,235 + Xcc-8004.5117.1 0.71 -3.3
4,853,236 - Xcc-8004.5117.1 0.71 -2.4
4,853,236 - Xcc-8004.5117.1 0.71 +0.2
4,853,236 - Xcc-8004.5117.1 0.71 -1.6
4,853,236 - Xcc-8004.5117.1 0.71 +1.2
4,853,280 + Xcc-8004.5117.1 0.75 +1.2
4,853,280 + Xcc-8004.5117.1 0.75 -0.3
4,853,280 + Xcc-8004.5117.1 0.75 +0.3
4,853,280 + Xcc-8004.5117.1 0.75 +1.7
4,853,281 - Xcc-8004.5117.1 0.75 -1.8
4,853,281 - Xcc-8004.5117.1 0.75 -0.2
4,853,281 - Xcc-8004.5117.1 0.75 -2.5
4,853,281 - Xcc-8004.5117.1 0.75 -2.3
4,853,281 - Xcc-8004.5117.1 0.75 -0.3
4,853,281 - Xcc-8004.5117.1 0.75 -0.5
4,853,281 - Xcc-8004.5117.1 0.75 +4.2
4,853,281 - Xcc-8004.5117.1 0.75 -0.7
4,853,281 - Xcc-8004.5117.1 0.75 +1.6

Or see this region's nucleotide sequence