Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.485.1 and Xcc-8004.486.1 are separated by 287 nucleotides Xcc-8004.486.1 and Xcc-8004.487.1 are separated by 83 nucleotides
Xcc-8004.485.1: Xcc-8004.485.1 - FIG01209899: hypothetical protein, at 447,689 to 448,546
Xcc-8004.485.1
Xcc-8004.486.1: Xcc-8004.486.1 - Lipase, at 448,834 to 449,802
Xcc-8004.486.1
Xcc-8004.487.1: Xcc-8004.487.1 - FIG01211031: hypothetical protein, at 449,886 to 450,596
Xcc-8004.487.1
Position (kb) 448
449
450 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 447.867 kb on - strand, within Xcc-8004.485.1 at 447.867 kb on - strand, within Xcc-8004.485.1 at 447.983 kb on + strand, within Xcc-8004.485.1 at 447.983 kb on + strand, within Xcc-8004.485.1 at 447.984 kb on - strand, within Xcc-8004.485.1 at 448.028 kb on + strand, within Xcc-8004.485.1 at 448.202 kb on + strand, within Xcc-8004.485.1 at 448.203 kb on - strand, within Xcc-8004.485.1 at 448.350 kb on + strand, within Xcc-8004.485.1 at 448.351 kb on - strand, within Xcc-8004.485.1 at 448.351 kb on - strand, within Xcc-8004.485.1 at 448.358 kb on + strand, within Xcc-8004.485.1 at 448.358 kb on + strand, within Xcc-8004.485.1 at 448.358 kb on + strand, within Xcc-8004.485.1 at 448.358 kb on + strand, within Xcc-8004.485.1 at 448.358 kb on + strand, within Xcc-8004.485.1 at 448.359 kb on - strand, within Xcc-8004.485.1 at 448.359 kb on - strand, within Xcc-8004.485.1 at 448.359 kb on - strand, within Xcc-8004.485.1 at 448.359 kb on - strand, within Xcc-8004.485.1 at 448.359 kb on - strand, within Xcc-8004.485.1 at 448.359 kb on - strand, within Xcc-8004.485.1 at 448.362 kb on - strand, within Xcc-8004.485.1 at 448.666 kb on - strand at 448.725 kb on + strand at 448.725 kb on + strand at 448.726 kb on - strand at 448.726 kb on - strand at 449.027 kb on + strand, within Xcc-8004.486.1 at 449.028 kb on - strand, within Xcc-8004.486.1 at 449.070 kb on + strand, within Xcc-8004.486.1 at 449.070 kb on + strand, within Xcc-8004.486.1 at 449.070 kb on + strand, within Xcc-8004.486.1 at 449.071 kb on - strand, within Xcc-8004.486.1 at 449.071 kb on - strand, within Xcc-8004.486.1 at 449.626 kb on + strand, within Xcc-8004.486.1 at 449.627 kb on - strand, within Xcc-8004.486.1 at 449.966 kb on - strand, within Xcc-8004.487.1 at 450.317 kb on - strand, within Xcc-8004.487.1 at 450.466 kb on + strand, within Xcc-8004.487.1 at 450.466 kb on + strand, within Xcc-8004.487.1 at 450.467 kb on - strand, within Xcc-8004.487.1 at 450.467 kb on - strand, within Xcc-8004.487.1 at 450.467 kb on - strand, within Xcc-8004.487.1 at 450.467 kb on - strand, within Xcc-8004.487.1 at 450.467 kb on - strand, within Xcc-8004.487.1 at 450.562 kb on + strand at 450.563 kb on - strand at 450.627 kb on + strand at 450.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 447,867 - Xcc-8004.485.1 0.21 -2.7 447,867 - Xcc-8004.485.1 0.21 +0.6 447,983 + Xcc-8004.485.1 0.34 +0.4 447,983 + Xcc-8004.485.1 0.34 +0.1 447,984 - Xcc-8004.485.1 0.34 -0.4 448,028 + Xcc-8004.485.1 0.40 +0.0 448,202 + Xcc-8004.485.1 0.60 +1.2 448,203 - Xcc-8004.485.1 0.60 +6.1 448,350 + Xcc-8004.485.1 0.77 +0.9 448,351 - Xcc-8004.485.1 0.77 -2.9 448,351 - Xcc-8004.485.1 0.77 -2.5 448,358 + Xcc-8004.485.1 0.78 +0.2 448,358 + Xcc-8004.485.1 0.78 +0.7 448,358 + Xcc-8004.485.1 0.78 -1.2 448,358 + Xcc-8004.485.1 0.78 -0.7 448,358 + Xcc-8004.485.1 0.78 +1.9 448,359 - Xcc-8004.485.1 0.78 -0.7 448,359 - Xcc-8004.485.1 0.78 +0.4 448,359 - Xcc-8004.485.1 0.78 -3.3 448,359 - Xcc-8004.485.1 0.78 +0.7 448,359 - Xcc-8004.485.1 0.78 +0.2 448,359 - Xcc-8004.485.1 0.78 -4.1 448,362 - Xcc-8004.485.1 0.78 +0.9 448,666 - +1.6 448,725 + -1.4 448,725 + -0.4 448,726 - -0.3 448,726 - -0.8 449,027 + Xcc-8004.486.1 0.20 +0.2 449,028 - Xcc-8004.486.1 0.20 +2.1 449,070 + Xcc-8004.486.1 0.24 -1.2 449,070 + Xcc-8004.486.1 0.24 +0.5 449,070 + Xcc-8004.486.1 0.24 -0.6 449,071 - Xcc-8004.486.1 0.24 +1.0 449,071 - Xcc-8004.486.1 0.24 +2.9 449,626 + Xcc-8004.486.1 0.82 +0.2 449,627 - Xcc-8004.486.1 0.82 +1.5 449,966 - Xcc-8004.487.1 0.11 -0.7 450,317 - Xcc-8004.487.1 0.61 -1.6 450,466 + Xcc-8004.487.1 0.82 -1.0 450,466 + Xcc-8004.487.1 0.82 -1.5 450,467 - Xcc-8004.487.1 0.82 +1.0 450,467 - Xcc-8004.487.1 0.82 -3.4 450,467 - Xcc-8004.487.1 0.82 +1.1 450,467 - Xcc-8004.487.1 0.82 +2.8 450,467 - Xcc-8004.487.1 0.82 +0.1 450,562 + +1.5 450,563 - +0.2 450,627 + +1.0 450,628 - -2.3
Or see this region's nucleotide sequence