Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4652.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4651.1 and Xcc-8004.4652.1 are separated by 167 nucleotidesXcc-8004.4652.1 and Xcc-8004.4653.1 are separated by 178 nucleotides Xcc-8004.4651.1: Xcc-8004.4651.1 - FIG01212773: hypothetical protein, at 4,432,268 to 4,433,266 Xcc-8004.4651.1 Xcc-8004.4652.1: Xcc-8004.4652.1 - FIG01210787: hypothetical protein, at 4,433,434 to 4,434,123 Xcc-8004.4652.1 Xcc-8004.4653.1: Xcc-8004.4653.1 - amino acid transporter, at 4,434,302 to 4,435,897 Xcc-8004.4653.1 Position (kb) 4433 4434 4435Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4432.496 kb on + strand, within Xcc-8004.4651.1at 4432.496 kb on + strand, within Xcc-8004.4651.1at 4432.497 kb on - strand, within Xcc-8004.4651.1at 4432.583 kb on + strand, within Xcc-8004.4651.1at 4432.583 kb on + strand, within Xcc-8004.4651.1at 4432.583 kb on + strand, within Xcc-8004.4651.1at 4432.583 kb on + strand, within Xcc-8004.4651.1at 4432.583 kb on + strand, within Xcc-8004.4651.1at 4432.583 kb on + strand, within Xcc-8004.4651.1at 4432.584 kb on - strand, within Xcc-8004.4651.1at 4432.584 kb on - strand, within Xcc-8004.4651.1at 4432.584 kb on - strand, within Xcc-8004.4651.1at 4432.608 kb on + strand, within Xcc-8004.4651.1at 4432.609 kb on - strand, within Xcc-8004.4651.1at 4432.609 kb on - strand, within Xcc-8004.4651.1at 4432.637 kb on + strand, within Xcc-8004.4651.1at 4432.638 kb on - strand, within Xcc-8004.4651.1at 4432.638 kb on - strand, within Xcc-8004.4651.1at 4432.683 kb on + strand, within Xcc-8004.4651.1at 4432.683 kb on + strand, within Xcc-8004.4651.1at 4432.683 kb on + strand, within Xcc-8004.4651.1at 4432.684 kb on - strand, within Xcc-8004.4651.1at 4432.684 kb on - strand, within Xcc-8004.4651.1at 4432.684 kb on - strand, within Xcc-8004.4651.1at 4432.686 kb on + strand, within Xcc-8004.4651.1at 4432.686 kb on + strand, within Xcc-8004.4651.1at 4432.749 kb on + strand, within Xcc-8004.4651.1at 4432.750 kb on - strand, within Xcc-8004.4651.1at 4432.750 kb on - strand, within Xcc-8004.4651.1at 4432.890 kb on + strand, within Xcc-8004.4651.1at 4432.890 kb on + strand, within Xcc-8004.4651.1at 4432.890 kb on + strand, within Xcc-8004.4651.1at 4432.890 kb on + strand, within Xcc-8004.4651.1at 4432.890 kb on + strand, within Xcc-8004.4651.1at 4432.891 kb on - strand, within Xcc-8004.4651.1at 4432.891 kb on - strand, within Xcc-8004.4651.1at 4432.891 kb on - strand, within Xcc-8004.4651.1at 4432.965 kb on + strand, within Xcc-8004.4651.1at 4432.965 kb on + strand, within Xcc-8004.4651.1at 4432.965 kb on + strand, within Xcc-8004.4651.1at 4432.966 kb on - strand, within Xcc-8004.4651.1at 4432.966 kb on - strand, within Xcc-8004.4651.1at 4433.015 kb on + strand, within Xcc-8004.4651.1at 4433.109 kb on + strand, within Xcc-8004.4651.1at 4433.188 kb on + strandat 4433.188 kb on + strandat 4433.218 kb on + strandat 4433.218 kb on + strandat 4433.218 kb on + strandat 4433.218 kb on + strandat 4433.219 kb on - strandat 4433.271 kb on + strandat 4433.272 kb on - strandat 4433.272 kb on - strandat 4433.364 kb on + strandat 4433.364 kb on + strandat 4433.364 kb on + strandat 4433.365 kb on - strandat 4433.365 kb on - strandat 4433.365 kb on - strandat 4433.375 kb on - strandat 4433.456 kb on + strandat 4433.456 kb on + strandat 4433.457 kb on - strandat 4433.457 kb on - strandat 4433.462 kb on + strandat 4433.462 kb on + strandat 4433.463 kb on - strandat 4433.463 kb on - strandat 4433.463 kb on - strandat 4433.463 kb on - strandat 4433.463 kb on - strandat 4433.498 kb on + strandat 4433.498 kb on + strandat 4433.758 kb on + strand, within Xcc-8004.4652.1at 4433.759 kb on - strand, within Xcc-8004.4652.1at 4433.827 kb on + strand, within Xcc-8004.4652.1at 4433.827 kb on + strand, within Xcc-8004.4652.1at 4433.827 kb on + strand, within Xcc-8004.4652.1at 4433.828 kb on - strand, within Xcc-8004.4652.1at 4433.828 kb on - strand, within Xcc-8004.4652.1at 4433.828 kb on - strand, within Xcc-8004.4652.1at 4433.828 kb on - strand, within Xcc-8004.4652.1at 4433.977 kb on + strand, within Xcc-8004.4652.1at 4433.978 kb on - strand, within Xcc-8004.4652.1at 4434.059 kb on - strandat 4434.145 kb on - strandat 4434.145 kb on - strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.152 kb on + strandat 4434.153 kb on - strandat 4434.153 kb on - strandat 4434.153 kb on - strandat 4434.153 kb on - strandat 4434.153 kb on - strandat 4434.153 kb on - strandat 4434.153 kb on - strandat 4434.366 kb on + strandat 4434.366 kb on + strandat 4434.366 kb on + strandat 4434.366 kb on + strandat 4434.366 kb on + strandat 4434.366 kb on + strandat 4434.366 kb on + strandat 4434.367 kb on - strandat 4434.367 kb on - strandat 4434.367 kb on - strandat 4434.367 kb on - strandat 4434.367 kb on - strandat 4434.411 kb on + strandat 4434.480 kb on + strand, within Xcc-8004.4653.1at 4434.480 kb on + strand, within Xcc-8004.4653.1at 4434.481 kb on - strand, within Xcc-8004.4653.1at 4434.481 kb on - strand, within Xcc-8004.4653.1at 4434.481 kb on - strand, within Xcc-8004.4653.1at 4434.481 kb on - strand, within Xcc-8004.4653.1at 4434.481 kb on - strand, within Xcc-8004.4653.1at 4434.481 kb on - strand, within Xcc-8004.4653.1at 4434.546 kb on + strand, within Xcc-8004.4653.1at 4434.546 kb on + strand, within Xcc-8004.4653.1at 4434.546 kb on + strand, within Xcc-8004.4653.1at 4434.546 kb on + strand, within Xcc-8004.4653.1at 4434.547 kb on - strand, within Xcc-8004.4653.1at 4434.547 kb on - strand, within Xcc-8004.4653.1at 4434.549 kb on + strand, within Xcc-8004.4653.1at 4434.549 kb on + strand, within Xcc-8004.4653.1at 4434.549 kb on + strand, within Xcc-8004.4653.1at 4434.550 kb on - strand, within Xcc-8004.4653.1at 4434.550 kb on - strand, within Xcc-8004.4653.1at 4434.550 kb on - strand, within Xcc-8004.4653.1at 4434.555 kb on + strand, within Xcc-8004.4653.1at 4434.555 kb on + strand, within Xcc-8004.4653.1at 4434.555 kb on + strand, within Xcc-8004.4653.1at 4434.555 kb on + strand, within Xcc-8004.4653.1at 4434.556 kb on - strand, within Xcc-8004.4653.1at 4434.556 kb on - strand, within Xcc-8004.4653.1at 4434.556 kb on - strand, within Xcc-8004.4653.1at 4434.618 kb on + strand, within Xcc-8004.4653.1at 4434.619 kb on - strand, within Xcc-8004.4653.1at 4434.744 kb on + strand, within Xcc-8004.4653.1at 4434.745 kb on - strand, within Xcc-8004.4653.1at 4434.816 kb on + strand, within Xcc-8004.4653.1at 4434.816 kb on + strand, within Xcc-8004.4653.1at 4434.816 kb on + strand, within Xcc-8004.4653.1at 4434.817 kb on - strand, within Xcc-8004.4653.1at 4434.817 kb on - strand, within Xcc-8004.4653.1at 4434.817 kb on - strand, within Xcc-8004.4653.1at 4434.918 kb on + strand, within Xcc-8004.4653.1at 4434.919 kb on - strand, within Xcc-8004.4653.1at 4434.919 kb on - strand, within Xcc-8004.4653.1at 4434.945 kb on + strand, within Xcc-8004.4653.1at 4434.945 kb on + strand, within Xcc-8004.4653.1at 4434.946 kb on - strand, within Xcc-8004.4653.1at 4434.987 kb on + strand, within Xcc-8004.4653.1at 4434.987 kb on + strand, within Xcc-8004.4653.1at 4434.987 kb on + strand, within Xcc-8004.4653.1at 4434.988 kb on - strand, within Xcc-8004.4653.1at 4434.988 kb on - strand, within Xcc-8004.4653.1at 4434.988 kb on - strand, within Xcc-8004.4653.1at 4434.988 kb on - strand, within Xcc-8004.4653.1at 4435.107 kb on + strand, within Xcc-8004.4653.1at 4435.107 kb on + strand, within Xcc-8004.4653.1at 4435.108 kb on - strand, within Xcc-8004.4653.1at 4435.108 kb on - strand, within Xcc-8004.4653.1at 4435.108 kb on - strand, within Xcc-8004.4653.1at 4435.108 kb on - strand, within Xcc-8004.4653.1at 4435.108 kb on - strand, within Xcc-8004.4653.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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4,432,496 + Xcc-8004.4651.1 0.23 -3.0
4,432,496 + Xcc-8004.4651.1 0.23 -0.5
4,432,497 - Xcc-8004.4651.1 0.23 -1.0
4,432,583 + Xcc-8004.4651.1 0.32 +0.2
4,432,583 + Xcc-8004.4651.1 0.32 +1.3
4,432,583 + Xcc-8004.4651.1 0.32 -0.5
4,432,583 + Xcc-8004.4651.1 0.32 -1.3
4,432,583 + Xcc-8004.4651.1 0.32 -1.8
4,432,583 + Xcc-8004.4651.1 0.32 +0.1
4,432,584 - Xcc-8004.4651.1 0.32 +1.2
4,432,584 - Xcc-8004.4651.1 0.32 +0.4
4,432,584 - Xcc-8004.4651.1 0.32 -0.4
4,432,608 + Xcc-8004.4651.1 0.34 -1.0
4,432,609 - Xcc-8004.4651.1 0.34 -0.9
4,432,609 - Xcc-8004.4651.1 0.34 -0.1
4,432,637 + Xcc-8004.4651.1 0.37 -2.0
4,432,638 - Xcc-8004.4651.1 0.37 -2.6
4,432,638 - Xcc-8004.4651.1 0.37 -1.5
4,432,683 + Xcc-8004.4651.1 0.42 -3.7
4,432,683 + Xcc-8004.4651.1 0.42 +0.2
4,432,683 + Xcc-8004.4651.1 0.42 +0.5
4,432,684 - Xcc-8004.4651.1 0.42 -0.9
4,432,684 - Xcc-8004.4651.1 0.42 -0.4
4,432,684 - Xcc-8004.4651.1 0.42 -2.9
4,432,686 + Xcc-8004.4651.1 0.42 -1.1
4,432,686 + Xcc-8004.4651.1 0.42 -2.5
4,432,749 + Xcc-8004.4651.1 0.48 +0.8
4,432,750 - Xcc-8004.4651.1 0.48 +0.4
4,432,750 - Xcc-8004.4651.1 0.48 -2.5
4,432,890 + Xcc-8004.4651.1 0.62 -1.1
4,432,890 + Xcc-8004.4651.1 0.62 -2.7
4,432,890 + Xcc-8004.4651.1 0.62 -1.3
4,432,890 + Xcc-8004.4651.1 0.62 -1.5
4,432,890 + Xcc-8004.4651.1 0.62 +0.2
4,432,891 - Xcc-8004.4651.1 0.62 +0.9
4,432,891 - Xcc-8004.4651.1 0.62 -0.5
4,432,891 - Xcc-8004.4651.1 0.62 +0.6
4,432,965 + Xcc-8004.4651.1 0.70 +0.2
4,432,965 + Xcc-8004.4651.1 0.70 +1.5
4,432,965 + Xcc-8004.4651.1 0.70 +1.3
4,432,966 - Xcc-8004.4651.1 0.70 +0.8
4,432,966 - Xcc-8004.4651.1 0.70 +0.5
4,433,015 + Xcc-8004.4651.1 0.75 +2.2
4,433,109 + Xcc-8004.4651.1 0.84 -0.4
4,433,188 + -2.6
4,433,188 + +1.5
4,433,218 + -1.3
4,433,218 + +0.9
4,433,218 + -0.8
4,433,218 + +0.8
4,433,219 - -2.8
4,433,271 + -0.4
4,433,272 - -0.8
4,433,272 - +0.7
4,433,364 + +0.7
4,433,364 + -2.8
4,433,364 + -1.5
4,433,365 - +0.7
4,433,365 - +1.0
4,433,365 - -1.4
4,433,375 - +0.3
4,433,456 + +1.6
4,433,456 + +3.0
4,433,457 - +1.5
4,433,457 - +0.3
4,433,462 + -1.2
4,433,462 + +1.6
4,433,463 - +3.0
4,433,463 - -1.1
4,433,463 - +1.0
4,433,463 - +0.2
4,433,463 - -3.1
4,433,498 + -3.3
4,433,498 + -0.6
4,433,758 + Xcc-8004.4652.1 0.47 -2.5
4,433,759 - Xcc-8004.4652.1 0.47 +0.1
4,433,827 + Xcc-8004.4652.1 0.57 -0.4
4,433,827 + Xcc-8004.4652.1 0.57 -1.0
4,433,827 + Xcc-8004.4652.1 0.57 +0.8
4,433,828 - Xcc-8004.4652.1 0.57 +0.8
4,433,828 - Xcc-8004.4652.1 0.57 -2.2
4,433,828 - Xcc-8004.4652.1 0.57 +1.6
4,433,828 - Xcc-8004.4652.1 0.57 +0.9
4,433,977 + Xcc-8004.4652.1 0.79 +3.4
4,433,978 - Xcc-8004.4652.1 0.79 +0.5
4,434,059 - +0.9
4,434,145 - +0.3
4,434,145 - -1.2
4,434,152 + -3.7
4,434,152 + +0.9
4,434,152 + +1.4
4,434,152 + +0.1
4,434,152 + -1.7
4,434,152 + +0.6
4,434,152 + -1.9
4,434,152 + -1.1
4,434,152 + -1.7
4,434,152 + -3.1
4,434,152 + -2.3
4,434,153 - +0.3
4,434,153 - -3.3
4,434,153 - -3.4
4,434,153 - +1.6
4,434,153 - -2.2
4,434,153 - -1.1
4,434,153 - +0.5
4,434,366 + +0.8
4,434,366 + -1.8
4,434,366 + -0.6
4,434,366 + +0.4
4,434,366 + +1.2
4,434,366 + -0.2
4,434,366 + -0.7
4,434,367 - -2.5
4,434,367 - -0.3
4,434,367 - -2.0
4,434,367 - +0.3
4,434,367 - -2.4
4,434,411 + -1.2
4,434,480 + Xcc-8004.4653.1 0.11 -0.8
4,434,480 + Xcc-8004.4653.1 0.11 -3.9
4,434,481 - Xcc-8004.4653.1 0.11 -0.3
4,434,481 - Xcc-8004.4653.1 0.11 -0.9
4,434,481 - Xcc-8004.4653.1 0.11 -2.4
4,434,481 - Xcc-8004.4653.1 0.11 -1.5
4,434,481 - Xcc-8004.4653.1 0.11 +0.6
4,434,481 - Xcc-8004.4653.1 0.11 +1.8
4,434,546 + Xcc-8004.4653.1 0.15 -0.3
4,434,546 + Xcc-8004.4653.1 0.15 -2.2
4,434,546 + Xcc-8004.4653.1 0.15 +1.6
4,434,546 + Xcc-8004.4653.1 0.15 -3.6
4,434,547 - Xcc-8004.4653.1 0.15 -2.0
4,434,547 - Xcc-8004.4653.1 0.15 -0.6
4,434,549 + Xcc-8004.4653.1 0.15 -0.6
4,434,549 + Xcc-8004.4653.1 0.15 -1.8
4,434,549 + Xcc-8004.4653.1 0.15 +1.0
4,434,550 - Xcc-8004.4653.1 0.16 -0.0
4,434,550 - Xcc-8004.4653.1 0.16 -1.3
4,434,550 - Xcc-8004.4653.1 0.16 -2.2
4,434,555 + Xcc-8004.4653.1 0.16 +1.5
4,434,555 + Xcc-8004.4653.1 0.16 +0.3
4,434,555 + Xcc-8004.4653.1 0.16 -0.1
4,434,555 + Xcc-8004.4653.1 0.16 -3.3
4,434,556 - Xcc-8004.4653.1 0.16 -0.4
4,434,556 - Xcc-8004.4653.1 0.16 -3.0
4,434,556 - Xcc-8004.4653.1 0.16 -1.5
4,434,618 + Xcc-8004.4653.1 0.20 -2.1
4,434,619 - Xcc-8004.4653.1 0.20 -2.0
4,434,744 + Xcc-8004.4653.1 0.28 -1.5
4,434,745 - Xcc-8004.4653.1 0.28 -0.0
4,434,816 + Xcc-8004.4653.1 0.32 +0.9
4,434,816 + Xcc-8004.4653.1 0.32 -1.6
4,434,816 + Xcc-8004.4653.1 0.32 -0.4
4,434,817 - Xcc-8004.4653.1 0.32 +0.2
4,434,817 - Xcc-8004.4653.1 0.32 -1.3
4,434,817 - Xcc-8004.4653.1 0.32 -1.1
4,434,918 + Xcc-8004.4653.1 0.39 +0.3
4,434,919 - Xcc-8004.4653.1 0.39 +0.2
4,434,919 - Xcc-8004.4653.1 0.39 +1.2
4,434,945 + Xcc-8004.4653.1 0.40 +0.1
4,434,945 + Xcc-8004.4653.1 0.40 +1.0
4,434,946 - Xcc-8004.4653.1 0.40 +3.6
4,434,987 + Xcc-8004.4653.1 0.43 +2.3
4,434,987 + Xcc-8004.4653.1 0.43 +0.7
4,434,987 + Xcc-8004.4653.1 0.43 -0.9
4,434,988 - Xcc-8004.4653.1 0.43 -2.7
4,434,988 - Xcc-8004.4653.1 0.43 -0.1
4,434,988 - Xcc-8004.4653.1 0.43 -2.1
4,434,988 - Xcc-8004.4653.1 0.43 -0.5
4,435,107 + Xcc-8004.4653.1 0.50 -0.0
4,435,107 + Xcc-8004.4653.1 0.50 +0.6
4,435,108 - Xcc-8004.4653.1 0.51 +0.2
4,435,108 - Xcc-8004.4653.1 0.51 -2.0
4,435,108 - Xcc-8004.4653.1 0.51 -0.6
4,435,108 - Xcc-8004.4653.1 0.51 +0.3
4,435,108 - Xcc-8004.4653.1 0.51 -1.6

Or see this region's nucleotide sequence