Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4420.1 and Xcc-8004.4423.1 overlap by 4 nucleotides Xcc-8004.4423.1 and Xcc-8004.4424.1 overlap by 11 nucleotides Xcc-8004.4424.1 and Xcc-8004.4425.1 overlap by 17 nucleotides
Xcc-8004.4420.1: Xcc-8004.4420.1 - General secretion pathway protein D, at 4,230,359 to 4,232,638
Xcc-8004.4420.1
Xcc-8004.4423.1: Xcc-8004.4423.1 - General secretion pathway protein N, at 4,232,635 to 4,233,420
Xcc-8004.4423.1
Xcc-8004.4424.1: Xcc-8004.4424.1 - General secretion pathway protein M, at 4,233,410 to 4,234,051
Xcc-8004.4424.1
Xcc-8004.4425.1: Xcc-8004.4425.1 - General secretion pathway protein L, at 4,234,035 to 4,235,156
Xcc-8004.4425.1
Position (kb) 4233
4234
4235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4232.704 kb on - strand at 4232.704 kb on - strand at 4233.023 kb on + strand, within Xcc-8004.4423.1 at 4233.227 kb on + strand, within Xcc-8004.4423.1 at 4233.490 kb on - strand, within Xcc-8004.4424.1 at 4233.549 kb on + strand, within Xcc-8004.4424.1 at 4233.549 kb on + strand, within Xcc-8004.4424.1 at 4233.612 kb on + strand, within Xcc-8004.4424.1 at 4233.612 kb on + strand, within Xcc-8004.4424.1 at 4233.612 kb on + strand, within Xcc-8004.4424.1 at 4233.612 kb on + strand, within Xcc-8004.4424.1 at 4233.612 kb on + strand, within Xcc-8004.4424.1 at 4233.613 kb on - strand, within Xcc-8004.4424.1 at 4233.613 kb on - strand, within Xcc-8004.4424.1 at 4233.613 kb on - strand, within Xcc-8004.4424.1 at 4233.613 kb on - strand, within Xcc-8004.4424.1 at 4233.613 kb on - strand, within Xcc-8004.4424.1 at 4233.613 kb on - strand, within Xcc-8004.4424.1 at 4233.613 kb on - strand, within Xcc-8004.4424.1 at 4233.981 kb on + strand, within Xcc-8004.4424.1 at 4233.981 kb on + strand, within Xcc-8004.4424.1 at 4233.981 kb on + strand, within Xcc-8004.4424.1 at 4233.981 kb on + strand, within Xcc-8004.4424.1 at 4233.981 kb on + strand, within Xcc-8004.4424.1 at 4233.982 kb on - strand, within Xcc-8004.4424.1 at 4233.982 kb on - strand, within Xcc-8004.4424.1 at 4234.036 kb on + strand at 4234.037 kb on - strand at 4234.258 kb on + strand, within Xcc-8004.4425.1 at 4234.258 kb on + strand, within Xcc-8004.4425.1 at 4234.258 kb on + strand, within Xcc-8004.4425.1 at 4234.258 kb on + strand, within Xcc-8004.4425.1 at 4234.259 kb on - strand, within Xcc-8004.4425.1 at 4234.259 kb on - strand, within Xcc-8004.4425.1 at 4234.259 kb on - strand, within Xcc-8004.4425.1 at 4234.259 kb on - strand, within Xcc-8004.4425.1 at 4234.259 kb on - strand, within Xcc-8004.4425.1 at 4234.738 kb on + strand, within Xcc-8004.4425.1 at 4234.738 kb on + strand, within Xcc-8004.4425.1 at 4234.739 kb on - strand, within Xcc-8004.4425.1 at 4234.739 kb on - strand, within Xcc-8004.4425.1 at 4234.739 kb on - strand, within Xcc-8004.4425.1 at 4235.007 kb on + strand, within Xcc-8004.4425.1 at 4235.008 kb on - strand, within Xcc-8004.4425.1 at 4235.008 kb on - strand, within Xcc-8004.4425.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,232,704 - +2.5 4,232,704 - -2.0 4,233,023 + Xcc-8004.4423.1 0.49 +1.6 4,233,227 + Xcc-8004.4423.1 0.75 +1.3 4,233,490 - Xcc-8004.4424.1 0.12 +1.2 4,233,549 + Xcc-8004.4424.1 0.22 +0.8 4,233,549 + Xcc-8004.4424.1 0.22 -0.4 4,233,612 + Xcc-8004.4424.1 0.31 +2.5 4,233,612 + Xcc-8004.4424.1 0.31 +1.0 4,233,612 + Xcc-8004.4424.1 0.31 +0.8 4,233,612 + Xcc-8004.4424.1 0.31 +2.2 4,233,612 + Xcc-8004.4424.1 0.31 +2.4 4,233,613 - Xcc-8004.4424.1 0.32 +1.4 4,233,613 - Xcc-8004.4424.1 0.32 +0.4 4,233,613 - Xcc-8004.4424.1 0.32 +2.3 4,233,613 - Xcc-8004.4424.1 0.32 +1.9 4,233,613 - Xcc-8004.4424.1 0.32 -0.0 4,233,613 - Xcc-8004.4424.1 0.32 +2.1 4,233,613 - Xcc-8004.4424.1 0.32 +2.3 4,233,981 + Xcc-8004.4424.1 0.89 +1.0 4,233,981 + Xcc-8004.4424.1 0.89 +1.4 4,233,981 + Xcc-8004.4424.1 0.89 -1.1 4,233,981 + Xcc-8004.4424.1 0.89 +2.5 4,233,981 + Xcc-8004.4424.1 0.89 -1.8 4,233,982 - Xcc-8004.4424.1 0.89 -0.5 4,233,982 - Xcc-8004.4424.1 0.89 +1.0 4,234,036 + +0.5 4,234,037 - -0.7 4,234,258 + Xcc-8004.4425.1 0.20 +2.4 4,234,258 + Xcc-8004.4425.1 0.20 +1.0 4,234,258 + Xcc-8004.4425.1 0.20 -1.5 4,234,258 + Xcc-8004.4425.1 0.20 +1.7 4,234,259 - Xcc-8004.4425.1 0.20 +0.7 4,234,259 - Xcc-8004.4425.1 0.20 +0.3 4,234,259 - Xcc-8004.4425.1 0.20 -0.2 4,234,259 - Xcc-8004.4425.1 0.20 -2.6 4,234,259 - Xcc-8004.4425.1 0.20 +1.5 4,234,738 + Xcc-8004.4425.1 0.63 +2.5 4,234,738 + Xcc-8004.4425.1 0.63 +1.9 4,234,739 - Xcc-8004.4425.1 0.63 +0.3 4,234,739 - Xcc-8004.4425.1 0.63 +2.2 4,234,739 - Xcc-8004.4425.1 0.63 +0.4 4,235,007 + Xcc-8004.4425.1 0.87 +2.4 4,235,008 - Xcc-8004.4425.1 0.87 +0.1 4,235,008 - Xcc-8004.4425.1 0.87 +1.2
Or see this region's nucleotide sequence