Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4295.1 and Xcc-8004.4296.1 are separated by 28 nucleotides Xcc-8004.4296.1 and Xcc-8004.4297.1 are separated by 5 nucleotides
Xcc-8004.4295.1: Xcc-8004.4295.1 - FIG01211353: hypothetical protein, at 4,110,629 to 4,111,552
Xcc-8004.4295.1
Xcc-8004.4296.1: Xcc-8004.4296.1 - Hemin transport protein, at 4,111,581 to 4,112,222
Xcc-8004.4296.1
Xcc-8004.4297.1: Xcc-8004.4297.1 - Outer membrane hemin receptor, at 4,112,228 to 4,114,459
Xcc-8004.4297.1
Position (kb) 4111
4112
4113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4110.594 kb on + strand at 4110.594 kb on + strand at 4110.594 kb on + strand at 4110.630 kb on + strand at 4110.630 kb on + strand at 4110.823 kb on - strand, within Xcc-8004.4295.1 at 4110.823 kb on - strand, within Xcc-8004.4295.1 at 4110.844 kb on - strand, within Xcc-8004.4295.1 at 4110.844 kb on - strand, within Xcc-8004.4295.1 at 4110.844 kb on - strand, within Xcc-8004.4295.1 at 4110.850 kb on - strand, within Xcc-8004.4295.1 at 4110.850 kb on - strand, within Xcc-8004.4295.1 at 4110.850 kb on - strand, within Xcc-8004.4295.1 at 4110.850 kb on - strand, within Xcc-8004.4295.1 at 4111.021 kb on - strand, within Xcc-8004.4295.1 at 4111.021 kb on - strand, within Xcc-8004.4295.1 at 4111.021 kb on - strand, within Xcc-8004.4295.1 at 4111.102 kb on - strand, within Xcc-8004.4295.1 at 4111.248 kb on + strand, within Xcc-8004.4295.1 at 4111.248 kb on + strand, within Xcc-8004.4295.1 at 4111.249 kb on - strand, within Xcc-8004.4295.1 at 4111.249 kb on - strand, within Xcc-8004.4295.1 at 4111.441 kb on - strand, within Xcc-8004.4295.1 at 4111.569 kb on - strand at 4111.809 kb on - strand, within Xcc-8004.4296.1 at 4111.812 kb on - strand, within Xcc-8004.4296.1 at 4111.899 kb on + strand, within Xcc-8004.4296.1 at 4112.119 kb on + strand, within Xcc-8004.4296.1 at 4112.260 kb on + strand at 4112.337 kb on + strand at 4112.439 kb on + strand at 4112.439 kb on + strand at 4112.440 kb on - strand at 4112.440 kb on - strand at 4112.442 kb on + strand at 4112.442 kb on + strand at 4112.442 kb on + strand at 4112.443 kb on - strand at 4112.443 kb on - strand at 4112.443 kb on - strand at 4112.595 kb on + strand, within Xcc-8004.4297.1 at 4112.596 kb on - strand, within Xcc-8004.4297.1 at 4112.596 kb on - strand, within Xcc-8004.4297.1 at 4112.748 kb on + strand, within Xcc-8004.4297.1 at 4112.748 kb on + strand, within Xcc-8004.4297.1 at 4112.778 kb on + strand, within Xcc-8004.4297.1 at 4112.778 kb on + strand, within Xcc-8004.4297.1 at 4112.778 kb on + strand, within Xcc-8004.4297.1 at 4112.779 kb on - strand, within Xcc-8004.4297.1 at 4112.779 kb on - strand, within Xcc-8004.4297.1 at 4112.779 kb on - strand, within Xcc-8004.4297.1 at 4112.781 kb on + strand, within Xcc-8004.4297.1 at 4112.781 kb on + strand, within Xcc-8004.4297.1 at 4112.782 kb on - strand, within Xcc-8004.4297.1 at 4112.782 kb on - strand, within Xcc-8004.4297.1 at 4112.925 kb on + strand, within Xcc-8004.4297.1 at 4112.926 kb on - strand, within Xcc-8004.4297.1 at 4112.952 kb on + strand, within Xcc-8004.4297.1 at 4112.953 kb on - strand, within Xcc-8004.4297.1 at 4112.953 kb on - strand, within Xcc-8004.4297.1 at 4112.962 kb on - strand, within Xcc-8004.4297.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,110,594 + +0.3 4,110,594 + -0.1 4,110,594 + +0.6 4,110,630 + -1.7 4,110,630 + +0.8 4,110,823 - Xcc-8004.4295.1 0.21 -2.2 4,110,823 - Xcc-8004.4295.1 0.21 +0.7 4,110,844 - Xcc-8004.4295.1 0.23 +1.3 4,110,844 - Xcc-8004.4295.1 0.23 -1.3 4,110,844 - Xcc-8004.4295.1 0.23 +0.6 4,110,850 - Xcc-8004.4295.1 0.24 +0.5 4,110,850 - Xcc-8004.4295.1 0.24 -2.6 4,110,850 - Xcc-8004.4295.1 0.24 -0.4 4,110,850 - Xcc-8004.4295.1 0.24 +1.7 4,111,021 - Xcc-8004.4295.1 0.42 +1.1 4,111,021 - Xcc-8004.4295.1 0.42 -0.8 4,111,021 - Xcc-8004.4295.1 0.42 +1.9 4,111,102 - Xcc-8004.4295.1 0.51 +2.3 4,111,248 + Xcc-8004.4295.1 0.67 +1.1 4,111,248 + Xcc-8004.4295.1 0.67 -0.5 4,111,249 - Xcc-8004.4295.1 0.67 -0.2 4,111,249 - Xcc-8004.4295.1 0.67 +0.3 4,111,441 - Xcc-8004.4295.1 0.88 -1.5 4,111,569 - -1.4 4,111,809 - Xcc-8004.4296.1 0.36 +0.9 4,111,812 - Xcc-8004.4296.1 0.36 +2.8 4,111,899 + Xcc-8004.4296.1 0.50 +0.8 4,112,119 + Xcc-8004.4296.1 0.84 +1.5 4,112,260 + +0.8 4,112,337 + -2.6 4,112,439 + -0.6 4,112,439 + -1.6 4,112,440 - -0.1 4,112,440 - +0.6 4,112,442 + -2.4 4,112,442 + +1.6 4,112,442 + -0.1 4,112,443 - -1.0 4,112,443 - -0.5 4,112,443 - +1.9 4,112,595 + Xcc-8004.4297.1 0.16 -0.6 4,112,596 - Xcc-8004.4297.1 0.16 -2.9 4,112,596 - Xcc-8004.4297.1 0.16 +2.2 4,112,748 + Xcc-8004.4297.1 0.23 +1.7 4,112,748 + Xcc-8004.4297.1 0.23 -0.5 4,112,778 + Xcc-8004.4297.1 0.25 -0.7 4,112,778 + Xcc-8004.4297.1 0.25 +2.3 4,112,778 + Xcc-8004.4297.1 0.25 +0.2 4,112,779 - Xcc-8004.4297.1 0.25 -3.4 4,112,779 - Xcc-8004.4297.1 0.25 -0.9 4,112,779 - Xcc-8004.4297.1 0.25 +0.7 4,112,781 + Xcc-8004.4297.1 0.25 +2.8 4,112,781 + Xcc-8004.4297.1 0.25 -3.1 4,112,782 - Xcc-8004.4297.1 0.25 -2.4 4,112,782 - Xcc-8004.4297.1 0.25 +1.3 4,112,925 + Xcc-8004.4297.1 0.31 +1.2 4,112,926 - Xcc-8004.4297.1 0.31 +0.4 4,112,952 + Xcc-8004.4297.1 0.32 +0.2 4,112,953 - Xcc-8004.4297.1 0.32 -2.2 4,112,953 - Xcc-8004.4297.1 0.32 -0.2 4,112,962 - Xcc-8004.4297.1 0.33 +1.8
Or see this region's nucleotide sequence