Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4290.1 and Xcc-8004.4291.1 are separated by 45 nucleotides Xcc-8004.4291.1 and Xcc-8004.4292.1 are separated by 0 nucleotides Xcc-8004.4292.1 and Xcc-8004.4293.1 overlap by 4 nucleotides
Xcc-8004.4290.1: Xcc-8004.4290.1 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 4,105,959 to 4,106,861
Xcc-8004.4290.1
Xcc-8004.4291.1: Xcc-8004.4291.1 - Taurine-binding periplasmic protein TauA, at 4,106,907 to 4,107,950
Xcc-8004.4291.1
Xcc-8004.4292.1: Xcc-8004.4292.1 - Taurine transport ATP-binding protein TauB, at 4,107,951 to 4,108,793
Xcc-8004.4292.1
Xcc-8004.4293.1: Xcc-8004.4293.1 - Taurine transport system permease protein TauC, at 4,108,790 to 4,109,671
Xcc-8004.4293.1
Position (kb) 4106
4107
4108 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4106.314 kb on - strand, within Xcc-8004.4290.1 at 4106.334 kb on + strand, within Xcc-8004.4290.1 at 4106.487 kb on + strand, within Xcc-8004.4290.1 at 4106.487 kb on + strand, within Xcc-8004.4290.1 at 4106.499 kb on + strand, within Xcc-8004.4290.1 at 4106.728 kb on - strand, within Xcc-8004.4290.1 at 4106.728 kb on - strand, within Xcc-8004.4290.1 at 4106.995 kb on + strand at 4107.057 kb on + strand, within Xcc-8004.4291.1 at 4107.057 kb on + strand, within Xcc-8004.4291.1 at 4107.058 kb on - strand, within Xcc-8004.4291.1 at 4107.294 kb on + strand, within Xcc-8004.4291.1 at 4107.295 kb on - strand, within Xcc-8004.4291.1 at 4107.297 kb on + strand, within Xcc-8004.4291.1 at 4107.298 kb on - strand, within Xcc-8004.4291.1 at 4107.298 kb on - strand, within Xcc-8004.4291.1 at 4107.581 kb on + strand, within Xcc-8004.4291.1 at 4107.581 kb on + strand, within Xcc-8004.4291.1 at 4107.636 kb on + strand, within Xcc-8004.4291.1 at 4107.637 kb on - strand, within Xcc-8004.4291.1 at 4107.637 kb on - strand, within Xcc-8004.4291.1 at 4107.676 kb on - strand, within Xcc-8004.4291.1 at 4107.676 kb on - strand, within Xcc-8004.4291.1 at 4107.676 kb on - strand, within Xcc-8004.4291.1 at 4107.912 kb on + strand at 4107.913 kb on - strand at 4108.002 kb on + strand at 4108.288 kb on + strand, within Xcc-8004.4292.1 at 4108.288 kb on + strand, within Xcc-8004.4292.1 at 4108.362 kb on + strand, within Xcc-8004.4292.1 at 4108.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,106,314 - Xcc-8004.4290.1 0.39 +2.0 4,106,334 + Xcc-8004.4290.1 0.42 -0.3 4,106,487 + Xcc-8004.4290.1 0.58 +0.2 4,106,487 + Xcc-8004.4290.1 0.58 +2.6 4,106,499 + Xcc-8004.4290.1 0.60 -0.3 4,106,728 - Xcc-8004.4290.1 0.85 -2.3 4,106,728 - Xcc-8004.4290.1 0.85 +1.6 4,106,995 + -0.6 4,107,057 + Xcc-8004.4291.1 0.14 -0.0 4,107,057 + Xcc-8004.4291.1 0.14 +2.2 4,107,058 - Xcc-8004.4291.1 0.14 -1.4 4,107,294 + Xcc-8004.4291.1 0.37 -0.2 4,107,295 - Xcc-8004.4291.1 0.37 -0.3 4,107,297 + Xcc-8004.4291.1 0.37 +2.4 4,107,298 - Xcc-8004.4291.1 0.37 +0.3 4,107,298 - Xcc-8004.4291.1 0.37 +2.0 4,107,581 + Xcc-8004.4291.1 0.65 -0.3 4,107,581 + Xcc-8004.4291.1 0.65 +1.3 4,107,636 + Xcc-8004.4291.1 0.70 +2.8 4,107,637 - Xcc-8004.4291.1 0.70 +0.9 4,107,637 - Xcc-8004.4291.1 0.70 +0.2 4,107,676 - Xcc-8004.4291.1 0.74 +2.5 4,107,676 - Xcc-8004.4291.1 0.74 -1.2 4,107,676 - Xcc-8004.4291.1 0.74 +1.4 4,107,912 + -0.8 4,107,913 - -1.7 4,108,002 + -0.3 4,108,288 + Xcc-8004.4292.1 0.40 -1.0 4,108,288 + Xcc-8004.4292.1 0.40 +0.7 4,108,362 + Xcc-8004.4292.1 0.49 +5.1 4,108,842 - +1.8
Or see this region's nucleotide sequence