Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4253.1 and Xcc-8004.4254.1 are separated by 72 nucleotides Xcc-8004.4254.1 and Xcc-8004.4255.1 are separated by 9 nucleotides Xcc-8004.4255.1 and Xcc-8004.4256.1 are separated by 56 nucleotides
Xcc-8004.4253.1: Xcc-8004.4253.1 - Transcriptional regulator, LysR family, at 4,074,875 to 4,075,876
Xcc-8004.4253.1
Xcc-8004.4254.1: Xcc-8004.4254.1 - Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8), at 4,075,949 to 4,076,308
Xcc-8004.4254.1
Xcc-8004.4255.1: Xcc-8004.4255.1 - Protocatechuate 4,5-dioxygenase beta chain (EC 1.13.11.8), at 4,076,318 to 4,077,217
Xcc-8004.4255.1
Xcc-8004.4256.1: Xcc-8004.4256.1 - Transcriptional regulator for ferulate or vanillate catabolism, at 4,077,274 to 4,078,128
Xcc-8004.4256.1
Position (kb) 4075
4076
4077 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4075.160 kb on - strand, within Xcc-8004.4253.1 at 4075.250 kb on + strand, within Xcc-8004.4253.1 at 4075.603 kb on + strand, within Xcc-8004.4253.1 at 4076.016 kb on + strand, within Xcc-8004.4254.1 at 4076.083 kb on - strand, within Xcc-8004.4254.1 at 4076.265 kb on + strand, within Xcc-8004.4254.1 at 4076.265 kb on + strand, within Xcc-8004.4254.1 at 4076.266 kb on - strand, within Xcc-8004.4254.1 at 4076.433 kb on + strand, within Xcc-8004.4255.1 at 4076.529 kb on + strand, within Xcc-8004.4255.1 at 4076.530 kb on - strand, within Xcc-8004.4255.1 at 4076.536 kb on + strand, within Xcc-8004.4255.1 at 4076.867 kb on + strand, within Xcc-8004.4255.1 at 4077.015 kb on + strand, within Xcc-8004.4255.1 at 4077.052 kb on - strand, within Xcc-8004.4255.1 at 4077.052 kb on - strand, within Xcc-8004.4255.1 at 4077.108 kb on + strand, within Xcc-8004.4255.1 at 4077.159 kb on + strand at 4077.160 kb on - strand at 4077.160 kb on - strand at 4077.160 kb on - strand at 4077.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,075,160 - Xcc-8004.4253.1 0.28 -3.2 4,075,250 + Xcc-8004.4253.1 0.37 +2.1 4,075,603 + Xcc-8004.4253.1 0.73 +0.5 4,076,016 + Xcc-8004.4254.1 0.19 -3.0 4,076,083 - Xcc-8004.4254.1 0.37 +1.4 4,076,265 + Xcc-8004.4254.1 0.88 +1.0 4,076,265 + Xcc-8004.4254.1 0.88 +5.0 4,076,266 - Xcc-8004.4254.1 0.88 -1.1 4,076,433 + Xcc-8004.4255.1 0.13 -0.5 4,076,529 + Xcc-8004.4255.1 0.23 +1.6 4,076,530 - Xcc-8004.4255.1 0.24 +0.5 4,076,536 + Xcc-8004.4255.1 0.24 -0.7 4,076,867 + Xcc-8004.4255.1 0.61 -0.2 4,077,015 + Xcc-8004.4255.1 0.77 -0.8 4,077,052 - Xcc-8004.4255.1 0.82 -2.0 4,077,052 - Xcc-8004.4255.1 0.82 +0.5 4,077,108 + Xcc-8004.4255.1 0.88 -1.2 4,077,159 + -0.4 4,077,160 - +0.0 4,077,160 - -1.1 4,077,160 - -0.2 4,077,160 - -0.3
Or see this region's nucleotide sequence