Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4181.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4179.1 and Xcc-8004.4180.1 are separated by 25 nucleotidesXcc-8004.4180.1 and Xcc-8004.4181.1 are separated by 9 nucleotidesXcc-8004.4181.1 and Xcc-8004.4183.1 are separated by 30 nucleotidesXcc-8004.4183.1 and Xcc-8004.4184.1 overlap by 19 nucleotides Xcc-8004.4179.1: Xcc-8004.4179.1 - TPR domain protein, putative component of TonB system, at 4,013,839 to 4,015,545 Xcc-8004.4179.1 Xcc-8004.4180.1: Xcc-8004.4180.1 - hypothetical protein, at 4,015,571 to 4,016,146 Xcc-8004.4180.1 Xcc-8004.4181.1: Xcc-8004.4181.1 - Molybdenum cofactor biosynthesis protein MoaB, at 4,016,156 to 4,016,674 Xcc-8004.4181.1 Xcc-8004.4183.1: Xcc-8004.4183.1 - Transcriptional regulator, at 4,016,705 to 4,017,487 Xcc-8004.4183.1 Xcc-8004.4184.1: Xcc-8004.4184.1 - FIG01211927: hypothetical protein, at 4,017,469 to 4,018,692 Xcc-8004.4184.1 Position (kb) 4016 4017Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4015.178 kb on - strand, within Xcc-8004.4179.1at 4015.215 kb on + strand, within Xcc-8004.4179.1at 4015.225 kb on + strand, within Xcc-8004.4179.1at 4015.225 kb on + strand, within Xcc-8004.4179.1at 4015.225 kb on + strand, within Xcc-8004.4179.1at 4015.225 kb on + strand, within Xcc-8004.4179.1at 4015.225 kb on + strand, within Xcc-8004.4179.1at 4015.225 kb on + strand, within Xcc-8004.4179.1at 4015.226 kb on - strand, within Xcc-8004.4179.1at 4015.226 kb on - strand, within Xcc-8004.4179.1at 4015.226 kb on - strand, within Xcc-8004.4179.1at 4015.237 kb on - strand, within Xcc-8004.4179.1at 4015.237 kb on - strand, within Xcc-8004.4179.1at 4015.256 kb on + strand, within Xcc-8004.4179.1at 4015.257 kb on - strand, within Xcc-8004.4179.1at 4015.257 kb on - strand, within Xcc-8004.4179.1at 4015.470 kb on + strandat 4015.470 kb on + strandat 4015.470 kb on + strandat 4015.471 kb on - strandat 4015.569 kb on - strandat 4015.723 kb on + strand, within Xcc-8004.4180.1at 4015.723 kb on + strand, within Xcc-8004.4180.1at 4015.752 kb on + strand, within Xcc-8004.4180.1at 4015.753 kb on - strand, within Xcc-8004.4180.1at 4015.890 kb on + strand, within Xcc-8004.4180.1at 4015.890 kb on + strand, within Xcc-8004.4180.1at 4015.890 kb on + strand, within Xcc-8004.4180.1at 4015.891 kb on - strand, within Xcc-8004.4180.1at 4015.891 kb on - strand, within Xcc-8004.4180.1at 4015.891 kb on - strand, within Xcc-8004.4180.1at 4015.908 kb on + strand, within Xcc-8004.4180.1at 4016.058 kb on + strand, within Xcc-8004.4180.1at 4016.058 kb on + strand, within Xcc-8004.4180.1at 4016.058 kb on + strand, within Xcc-8004.4180.1at 4016.058 kb on + strand, within Xcc-8004.4180.1at 4016.059 kb on - strand, within Xcc-8004.4180.1at 4016.059 kb on - strand, within Xcc-8004.4180.1at 4016.059 kb on - strand, within Xcc-8004.4180.1at 4016.068 kb on + strand, within Xcc-8004.4180.1at 4016.069 kb on - strand, within Xcc-8004.4180.1at 4016.144 kb on + strandat 4016.144 kb on + strandat 4016.197 kb on - strandat 4016.246 kb on + strand, within Xcc-8004.4181.1at 4016.672 kb on + strandat 4016.672 kb on + strandat 4016.729 kb on + strandat 4016.729 kb on + strandat 4016.729 kb on + strandat 4016.730 kb on - strandat 4016.730 kb on - strandat 4016.939 kb on + strand, within Xcc-8004.4183.1at 4016.939 kb on + strand, within Xcc-8004.4183.1at 4016.939 kb on + strand, within Xcc-8004.4183.1at 4016.940 kb on - strand, within Xcc-8004.4183.1at 4016.951 kb on + strand, within Xcc-8004.4183.1at 4016.951 kb on + strand, within Xcc-8004.4183.1at 4016.951 kb on + strand, within Xcc-8004.4183.1at 4016.952 kb on - strand, within Xcc-8004.4183.1at 4016.952 kb on - strand, within Xcc-8004.4183.1at 4017.005 kb on + strand, within Xcc-8004.4183.1at 4017.005 kb on + strand, within Xcc-8004.4183.1at 4017.039 kb on - strand, within Xcc-8004.4183.1at 4017.039 kb on - strand, within Xcc-8004.4183.1at 4017.039 kb on - strand, within Xcc-8004.4183.1at 4017.056 kb on + strand, within Xcc-8004.4183.1at 4017.056 kb on + strand, within Xcc-8004.4183.1at 4017.057 kb on - strand, within Xcc-8004.4183.1at 4017.057 kb on - strand, within Xcc-8004.4183.1at 4017.057 kb on - strand, within Xcc-8004.4183.1at 4017.128 kb on + strand, within Xcc-8004.4183.1at 4017.128 kb on + strand, within Xcc-8004.4183.1at 4017.129 kb on - strand, within Xcc-8004.4183.1at 4017.129 kb on - strand, within Xcc-8004.4183.1at 4017.129 kb on - strand, within Xcc-8004.4183.1at 4017.129 kb on - strand, within Xcc-8004.4183.1at 4017.129 kb on - strand, within Xcc-8004.4183.1at 4017.129 kb on - strand, within Xcc-8004.4183.1at 4017.239 kb on + strand, within Xcc-8004.4183.1at 4017.239 kb on + strand, within Xcc-8004.4183.1at 4017.240 kb on - strand, within Xcc-8004.4183.1at 4017.240 kb on - strand, within Xcc-8004.4183.1at 4017.240 kb on - strand, within Xcc-8004.4183.1at 4017.248 kb on + strand, within Xcc-8004.4183.1at 4017.248 kb on + strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.249 kb on - strand, within Xcc-8004.4183.1at 4017.379 kb on + strand, within Xcc-8004.4183.1at 4017.379 kb on + strand, within Xcc-8004.4183.1at 4017.443 kb on + strandat 4017.444 kb on - strandat 4017.471 kb on - strandat 4017.471 kb on - strandat 4017.471 kb on - strandat 4017.635 kb on + strand, within Xcc-8004.4184.1at 4017.635 kb on + strand, within Xcc-8004.4184.1at 4017.635 kb on + strand, within Xcc-8004.4184.1at 4017.635 kb on + strand, within Xcc-8004.4184.1at 4017.636 kb on - strand, within Xcc-8004.4184.1at 4017.636 kb on - strand, within Xcc-8004.4184.1at 4017.636 kb on - strand, within Xcc-8004.4184.1at 4017.636 kb on - strand, within Xcc-8004.4184.1at 4017.636 kb on - strand, within Xcc-8004.4184.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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4,015,178 - Xcc-8004.4179.1 0.78 +2.7
4,015,215 + Xcc-8004.4179.1 0.81 +1.4
4,015,225 + Xcc-8004.4179.1 0.81 +0.3
4,015,225 + Xcc-8004.4179.1 0.81 +0.7
4,015,225 + Xcc-8004.4179.1 0.81 +0.6
4,015,225 + Xcc-8004.4179.1 0.81 +0.8
4,015,225 + Xcc-8004.4179.1 0.81 -0.9
4,015,225 + Xcc-8004.4179.1 0.81 +0.7
4,015,226 - Xcc-8004.4179.1 0.81 -0.3
4,015,226 - Xcc-8004.4179.1 0.81 +1.2
4,015,226 - Xcc-8004.4179.1 0.81 -0.8
4,015,237 - Xcc-8004.4179.1 0.82 +0.5
4,015,237 - Xcc-8004.4179.1 0.82 +1.2
4,015,256 + Xcc-8004.4179.1 0.83 +0.2
4,015,257 - Xcc-8004.4179.1 0.83 -0.1
4,015,257 - Xcc-8004.4179.1 0.83 +0.8
4,015,470 + +0.4
4,015,470 + -0.9
4,015,470 + -1.9
4,015,471 - -2.7
4,015,569 - -2.0
4,015,723 + Xcc-8004.4180.1 0.26 -0.9
4,015,723 + Xcc-8004.4180.1 0.26 -1.6
4,015,752 + Xcc-8004.4180.1 0.31 -0.7
4,015,753 - Xcc-8004.4180.1 0.32 -0.1
4,015,890 + Xcc-8004.4180.1 0.55 -2.2
4,015,890 + Xcc-8004.4180.1 0.55 -1.3
4,015,890 + Xcc-8004.4180.1 0.55 -0.3
4,015,891 - Xcc-8004.4180.1 0.56 +3.9
4,015,891 - Xcc-8004.4180.1 0.56 -1.3
4,015,891 - Xcc-8004.4180.1 0.56 +1.4
4,015,908 + Xcc-8004.4180.1 0.59 +0.4
4,016,058 + Xcc-8004.4180.1 0.85 -2.1
4,016,058 + Xcc-8004.4180.1 0.85 -0.1
4,016,058 + Xcc-8004.4180.1 0.85 +0.2
4,016,058 + Xcc-8004.4180.1 0.85 -1.2
4,016,059 - Xcc-8004.4180.1 0.85 +3.1
4,016,059 - Xcc-8004.4180.1 0.85 -0.3
4,016,059 - Xcc-8004.4180.1 0.85 +0.9
4,016,068 + Xcc-8004.4180.1 0.86 +0.3
4,016,069 - Xcc-8004.4180.1 0.86 +0.4
4,016,144 + +1.7
4,016,144 + +0.8
4,016,197 - +0.5
4,016,246 + Xcc-8004.4181.1 0.17 +1.4
4,016,672 + -2.2
4,016,672 + -3.0
4,016,729 + -0.8
4,016,729 + +0.1
4,016,729 + +1.2
4,016,730 - +0.2
4,016,730 - -0.6
4,016,939 + Xcc-8004.4183.1 0.30 -0.7
4,016,939 + Xcc-8004.4183.1 0.30 +0.3
4,016,939 + Xcc-8004.4183.1 0.30 +0.6
4,016,940 - Xcc-8004.4183.1 0.30 -0.1
4,016,951 + Xcc-8004.4183.1 0.31 +0.4
4,016,951 + Xcc-8004.4183.1 0.31 -2.3
4,016,951 + Xcc-8004.4183.1 0.31 +1.6
4,016,952 - Xcc-8004.4183.1 0.32 -2.6
4,016,952 - Xcc-8004.4183.1 0.32 -0.1
4,017,005 + Xcc-8004.4183.1 0.38 -0.3
4,017,005 + Xcc-8004.4183.1 0.38 -2.5
4,017,039 - Xcc-8004.4183.1 0.43 +1.0
4,017,039 - Xcc-8004.4183.1 0.43 +1.1
4,017,039 - Xcc-8004.4183.1 0.43 +0.7
4,017,056 + Xcc-8004.4183.1 0.45 +0.8
4,017,056 + Xcc-8004.4183.1 0.45 -0.1
4,017,057 - Xcc-8004.4183.1 0.45 -1.6
4,017,057 - Xcc-8004.4183.1 0.45 +0.7
4,017,057 - Xcc-8004.4183.1 0.45 +1.4
4,017,128 + Xcc-8004.4183.1 0.54 -1.5
4,017,128 + Xcc-8004.4183.1 0.54 -0.7
4,017,129 - Xcc-8004.4183.1 0.54 -2.4
4,017,129 - Xcc-8004.4183.1 0.54 +1.9
4,017,129 - Xcc-8004.4183.1 0.54 +0.3
4,017,129 - Xcc-8004.4183.1 0.54 -0.6
4,017,129 - Xcc-8004.4183.1 0.54 -2.1
4,017,129 - Xcc-8004.4183.1 0.54 +1.3
4,017,239 + Xcc-8004.4183.1 0.68 -3.1
4,017,239 + Xcc-8004.4183.1 0.68 +0.2
4,017,240 - Xcc-8004.4183.1 0.68 +0.2
4,017,240 - Xcc-8004.4183.1 0.68 +1.1
4,017,240 - Xcc-8004.4183.1 0.68 -0.5
4,017,248 + Xcc-8004.4183.1 0.69 +0.5
4,017,248 + Xcc-8004.4183.1 0.69 -2.9
4,017,249 - Xcc-8004.4183.1 0.69 -1.8
4,017,249 - Xcc-8004.4183.1 0.69 +1.3
4,017,249 - Xcc-8004.4183.1 0.69 +2.3
4,017,249 - Xcc-8004.4183.1 0.69 -0.4
4,017,249 - Xcc-8004.4183.1 0.69 +0.8
4,017,249 - Xcc-8004.4183.1 0.69 +2.0
4,017,249 - Xcc-8004.4183.1 0.69 +1.4
4,017,249 - Xcc-8004.4183.1 0.69 -0.9
4,017,379 + Xcc-8004.4183.1 0.86 -1.9
4,017,379 + Xcc-8004.4183.1 0.86 +1.3
4,017,443 + -1.2
4,017,444 - +0.6
4,017,471 - -1.6
4,017,471 - -0.6
4,017,471 - +1.3
4,017,635 + Xcc-8004.4184.1 0.14 +0.2
4,017,635 + Xcc-8004.4184.1 0.14 +0.5
4,017,635 + Xcc-8004.4184.1 0.14 -0.6
4,017,635 + Xcc-8004.4184.1 0.14 -0.9
4,017,636 - Xcc-8004.4184.1 0.14 -0.8
4,017,636 - Xcc-8004.4184.1 0.14 -2.8
4,017,636 - Xcc-8004.4184.1 0.14 -1.0
4,017,636 - Xcc-8004.4184.1 0.14 -2.3
4,017,636 - Xcc-8004.4184.1 0.14 -0.4

Or see this region's nucleotide sequence