Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.400.1 and Xcc-8004.401.1 are separated by 97 nucleotides Xcc-8004.401.1 and Xcc-8004.402.1 are separated by 169 nucleotides Xcc-8004.402.1 and Xcc-8004.403.1 overlap by 8 nucleotides
Xcc-8004.400.1: Xcc-8004.400.1 - Transcriptional activator MetR, at 386,987 to 387,892
Xcc-8004.400.1
Xcc-8004.401.1: Xcc-8004.401.1 - FMN reductase (EC 1.5.1.29), at 387,990 to 388,583
Xcc-8004.401.1
Xcc-8004.402.1: Xcc-8004.402.1 - FIG01209770: hypothetical protein, at 388,753 to 389,772
Xcc-8004.402.1
Xcc-8004.403.1: Xcc-8004.403.1 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14), at 389,765 to 390,796
Xcc-8004.403.1
Position (kb) 388
389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.957 kb on - strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.977 kb on + strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 387.978 kb on - strand at 388.252 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.435 kb on - strand, within Xcc-8004.401.1 at 388.461 kb on + strand, within Xcc-8004.401.1 at 388.805 kb on - strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.826 kb on - strand at 389.036 kb on + strand, within Xcc-8004.402.1 at 389.076 kb on + strand, within Xcc-8004.402.1 at 389.110 kb on + strand, within Xcc-8004.402.1 at 389.110 kb on + strand, within Xcc-8004.402.1 at 389.111 kb on - strand, within Xcc-8004.402.1 at 389.111 kb on - strand, within Xcc-8004.402.1 at 389.235 kb on + strand, within Xcc-8004.402.1 at 389.239 kb on + strand, within Xcc-8004.402.1 at 389.240 kb on - strand, within Xcc-8004.402.1 at 389.299 kb on + strand, within Xcc-8004.402.1 at 389.299 kb on + strand, within Xcc-8004.402.1 at 389.300 kb on - strand, within Xcc-8004.402.1 at 389.374 kb on + strand, within Xcc-8004.402.1 at 389.443 kb on + strand, within Xcc-8004.402.1 at 389.543 kb on - strand, within Xcc-8004.402.1 at 389.543 kb on - strand, within Xcc-8004.402.1 at 389.573 kb on - strand, within Xcc-8004.402.1 at 389.770 kb on + strand at 389.770 kb on + strand at 389.770 kb on + strand at 389.771 kb on - strand at 389.771 kb on - strand at 390.044 kb on + strand, within Xcc-8004.403.1 at 390.045 kb on - strand, within Xcc-8004.403.1 at 390.201 kb on - strand, within Xcc-8004.403.1 at 390.404 kb on + strand, within Xcc-8004.403.1 at 390.404 kb on + strand, within Xcc-8004.403.1 at 390.405 kb on - strand, within Xcc-8004.403.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 387,935 + -2.9 387,956 + +0.2 387,956 + +1.4 387,956 + -3.5 387,956 + +0.5 387,956 + +0.7 387,956 + +0.2 387,956 + +1.7 387,956 + -0.5 387,956 + +0.5 387,956 + +0.9 387,956 + -1.1 387,956 + +1.7 387,956 + -1.5 387,956 + -1.2 387,957 - -1.1 387,957 - -1.5 387,957 - -0.8 387,957 - -1.1 387,957 - +1.8 387,957 - -1.3 387,957 - +0.2 387,957 - -4.2 387,977 + -0.3 387,977 + -2.1 387,977 + -1.2 387,977 + -1.3 387,978 - -2.0 387,978 - -3.1 387,978 - +0.6 387,978 - +0.7 387,978 - -1.6 387,978 - +0.4 388,252 - Xcc-8004.401.1 0.44 +0.5 388,435 - Xcc-8004.401.1 0.75 -0.8 388,435 - Xcc-8004.401.1 0.75 -1.4 388,461 + Xcc-8004.401.1 0.79 +0.1 388,805 - +0.1 388,821 + -0.1 388,821 + -2.6 388,826 - +1.8 389,036 + Xcc-8004.402.1 0.28 -0.6 389,076 + Xcc-8004.402.1 0.32 -1.2 389,110 + Xcc-8004.402.1 0.35 -1.8 389,110 + Xcc-8004.402.1 0.35 +1.1 389,111 - Xcc-8004.402.1 0.35 +1.5 389,111 - Xcc-8004.402.1 0.35 +0.7 389,235 + Xcc-8004.402.1 0.47 +1.8 389,239 + Xcc-8004.402.1 0.48 +1.3 389,240 - Xcc-8004.402.1 0.48 +2.3 389,299 + Xcc-8004.402.1 0.54 +0.2 389,299 + Xcc-8004.402.1 0.54 -1.9 389,300 - Xcc-8004.402.1 0.54 -2.3 389,374 + Xcc-8004.402.1 0.61 +0.7 389,443 + Xcc-8004.402.1 0.68 +4.1 389,543 - Xcc-8004.402.1 0.77 -2.1 389,543 - Xcc-8004.402.1 0.77 -1.3 389,573 - Xcc-8004.402.1 0.80 -0.6 389,770 + -1.6 389,770 + -1.5 389,770 + -0.3 389,771 - -0.8 389,771 - +0.5 390,044 + Xcc-8004.403.1 0.27 -3.1 390,045 - Xcc-8004.403.1 0.27 -0.5 390,201 - Xcc-8004.403.1 0.42 -1.7 390,404 + Xcc-8004.403.1 0.62 +0.2 390,404 + Xcc-8004.403.1 0.62 -0.8 390,405 - Xcc-8004.403.1 0.62 -0.6
Or see this region's nucleotide sequence