Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.398.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.397.1 and Xcc-8004.398.1 are separated by 615 nucleotidesXcc-8004.398.1 and Xcc-8004.399.1 are separated by 276 nucleotides Xcc-8004.397.1: Xcc-8004.397.1 - Short-chain dehydrogenase/reductase SDR, at 382,387 to 383,145 Xcc-8004.397.1 Xcc-8004.398.1: Xcc-8004.398.1 - Conditioned medium factor, at 383,761 to 385,722 Xcc-8004.398.1 Xcc-8004.399.1: Xcc-8004.399.1 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 385,999 to 386,871 Xcc-8004.399.1 Position (kb) 383 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 382.804 kb on + strand, within Xcc-8004.397.1at 382.966 kb on + strand, within Xcc-8004.397.1at 382.966 kb on + strand, within Xcc-8004.397.1at 382.966 kb on + strand, within Xcc-8004.397.1at 382.966 kb on + strand, within Xcc-8004.397.1at 382.967 kb on - strand, within Xcc-8004.397.1at 382.967 kb on - strand, within Xcc-8004.397.1at 382.967 kb on - strand, within Xcc-8004.397.1at 382.977 kb on + strand, within Xcc-8004.397.1at 382.978 kb on - strand, within Xcc-8004.397.1at 383.144 kb on - strandat 383.146 kb on + strandat 383.157 kb on + strandat 383.157 kb on + strandat 383.191 kb on - strandat 383.202 kb on + strandat 383.202 kb on + strandat 383.203 kb on - strandat 383.315 kb on + strandat 383.342 kb on + strandat 383.371 kb on + strandat 383.411 kb on + strandat 383.411 kb on + strandat 383.411 kb on + strandat 383.412 kb on - strandat 383.498 kb on + strandat 383.508 kb on + strandat 383.646 kb on - strandat 383.646 kb on - strandat 383.689 kb on + strandat 383.689 kb on + strandat 383.751 kb on + strandat 383.869 kb on + strandat 383.954 kb on + strandat 383.996 kb on + strand, within Xcc-8004.398.1at 383.997 kb on - strand, within Xcc-8004.398.1at 383.999 kb on + strand, within Xcc-8004.398.1at 384.060 kb on - strand, within Xcc-8004.398.1at 384.154 kb on + strand, within Xcc-8004.398.1at 384.203 kb on + strand, within Xcc-8004.398.1at 384.206 kb on + strand, within Xcc-8004.398.1at 384.206 kb on + strand, within Xcc-8004.398.1at 384.206 kb on + strand, within Xcc-8004.398.1at 384.206 kb on + strand, within Xcc-8004.398.1at 384.206 kb on + strand, within Xcc-8004.398.1at 384.206 kb on + strand, within Xcc-8004.398.1at 384.207 kb on - strand, within Xcc-8004.398.1at 384.207 kb on - strand, within Xcc-8004.398.1at 384.207 kb on - strand, within Xcc-8004.398.1at 384.207 kb on - strand, within Xcc-8004.398.1at 384.207 kb on - strand, within Xcc-8004.398.1at 384.212 kb on + strand, within Xcc-8004.398.1at 384.212 kb on + strand, within Xcc-8004.398.1at 384.212 kb on + strand, within Xcc-8004.398.1at 384.213 kb on - strand, within Xcc-8004.398.1at 384.336 kb on + strand, within Xcc-8004.398.1at 384.390 kb on - strand, within Xcc-8004.398.1at 384.390 kb on - strand, within Xcc-8004.398.1at 384.516 kb on + strand, within Xcc-8004.398.1at 384.584 kb on + strand, within Xcc-8004.398.1at 384.584 kb on + strand, within Xcc-8004.398.1at 384.584 kb on + strand, within Xcc-8004.398.1at 384.584 kb on + strand, within Xcc-8004.398.1at 384.584 kb on + strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.585 kb on - strand, within Xcc-8004.398.1at 384.774 kb on - strand, within Xcc-8004.398.1at 384.895 kb on + strand, within Xcc-8004.398.1at 384.895 kb on + strand, within Xcc-8004.398.1at 384.896 kb on - strand, within Xcc-8004.398.1at 385.001 kb on + strand, within Xcc-8004.398.1at 385.001 kb on + strand, within Xcc-8004.398.1at 385.001 kb on + strand, within Xcc-8004.398.1at 385.001 kb on + strand, within Xcc-8004.398.1at 385.002 kb on - strand, within Xcc-8004.398.1at 385.129 kb on + strand, within Xcc-8004.398.1at 385.256 kb on + strand, within Xcc-8004.398.1at 385.256 kb on + strand, within Xcc-8004.398.1at 385.257 kb on - strand, within Xcc-8004.398.1at 385.331 kb on + strand, within Xcc-8004.398.1at 385.555 kb on + strandat 385.555 kb on + strandat 385.648 kb on + strandat 385.716 kb on + strandat 385.716 kb on + strandat 385.717 kb on - strandat 385.717 kb on - strandat 385.818 kb on - strandat 385.888 kb on + strandat 385.888 kb on + strandat 385.895 kb on + strandat 385.896 kb on - strandat 385.896 kb on - strandat 386.033 kb on + strandat 386.078 kb on + strandat 386.078 kb on + strandat 386.079 kb on - strandat 386.079 kb on - strandat 386.187 kb on - strand, within Xcc-8004.399.1at 386.235 kb on + strand, within Xcc-8004.399.1at 386.235 kb on - strand, within Xcc-8004.399.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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382,804 + Xcc-8004.397.1 0.55 +0.7
382,966 + Xcc-8004.397.1 0.76 -2.0
382,966 + Xcc-8004.397.1 0.76 -1.4
382,966 + Xcc-8004.397.1 0.76 -0.6
382,966 + Xcc-8004.397.1 0.76 -2.0
382,967 - Xcc-8004.397.1 0.76 -1.3
382,967 - Xcc-8004.397.1 0.76 -0.9
382,967 - Xcc-8004.397.1 0.76 +0.7
382,977 + Xcc-8004.397.1 0.78 +2.3
382,978 - Xcc-8004.397.1 0.78 -0.8
383,144 - +0.9
383,146 + +0.9
383,157 + -0.5
383,157 + +0.0
383,191 - -0.4
383,202 + +0.9
383,202 + +1.0
383,203 - +3.3
383,315 + +1.6
383,342 + +1.4
383,371 + +0.8
383,411 + +1.5
383,411 + -2.6
383,411 + +1.9
383,412 - +4.4
383,498 + +0.0
383,508 + -2.8
383,646 - -1.1
383,646 - +1.2
383,689 + -1.2
383,689 + +1.8
383,751 + +0.8
383,869 + +0.8
383,954 + +2.9
383,996 + Xcc-8004.398.1 0.12 +0.1
383,997 - Xcc-8004.398.1 0.12 +2.4
383,999 + Xcc-8004.398.1 0.12 -0.1
384,060 - Xcc-8004.398.1 0.15 -2.5
384,154 + Xcc-8004.398.1 0.20 +0.0
384,203 + Xcc-8004.398.1 0.23 -0.5
384,206 + Xcc-8004.398.1 0.23 +0.4
384,206 + Xcc-8004.398.1 0.23 -2.2
384,206 + Xcc-8004.398.1 0.23 +1.0
384,206 + Xcc-8004.398.1 0.23 +0.1
384,206 + Xcc-8004.398.1 0.23 -1.9
384,206 + Xcc-8004.398.1 0.23 -0.9
384,207 - Xcc-8004.398.1 0.23 +0.2
384,207 - Xcc-8004.398.1 0.23 +0.0
384,207 - Xcc-8004.398.1 0.23 +0.7
384,207 - Xcc-8004.398.1 0.23 -1.7
384,207 - Xcc-8004.398.1 0.23 -1.7
384,212 + Xcc-8004.398.1 0.23 -1.3
384,212 + Xcc-8004.398.1 0.23 -0.8
384,212 + Xcc-8004.398.1 0.23 -1.0
384,213 - Xcc-8004.398.1 0.23 -2.7
384,336 + Xcc-8004.398.1 0.29 -1.4
384,390 - Xcc-8004.398.1 0.32 -1.2
384,390 - Xcc-8004.398.1 0.32 -2.1
384,516 + Xcc-8004.398.1 0.38 +1.4
384,584 + Xcc-8004.398.1 0.42 +0.6
384,584 + Xcc-8004.398.1 0.42 +0.2
384,584 + Xcc-8004.398.1 0.42 -0.5
384,584 + Xcc-8004.398.1 0.42 -0.0
384,584 + Xcc-8004.398.1 0.42 +0.6
384,585 - Xcc-8004.398.1 0.42 -0.2
384,585 - Xcc-8004.398.1 0.42 -0.5
384,585 - Xcc-8004.398.1 0.42 +0.4
384,585 - Xcc-8004.398.1 0.42 -2.6
384,585 - Xcc-8004.398.1 0.42 +0.7
384,585 - Xcc-8004.398.1 0.42 +0.9
384,585 - Xcc-8004.398.1 0.42 -3.0
384,585 - Xcc-8004.398.1 0.42 -2.2
384,774 - Xcc-8004.398.1 0.52 +0.4
384,895 + Xcc-8004.398.1 0.58 -1.6
384,895 + Xcc-8004.398.1 0.58 -0.4
384,896 - Xcc-8004.398.1 0.58 -0.1
385,001 + Xcc-8004.398.1 0.63 -2.1
385,001 + Xcc-8004.398.1 0.63 +0.1
385,001 + Xcc-8004.398.1 0.63 +0.4
385,001 + Xcc-8004.398.1 0.63 -0.9
385,002 - Xcc-8004.398.1 0.63 +0.7
385,129 + Xcc-8004.398.1 0.70 +0.5
385,256 + Xcc-8004.398.1 0.76 +2.3
385,256 + Xcc-8004.398.1 0.76 -2.1
385,257 - Xcc-8004.398.1 0.76 -0.3
385,331 + Xcc-8004.398.1 0.80 -1.6
385,555 + -0.1
385,555 + -1.1
385,648 + +0.4
385,716 + +1.0
385,716 + -0.5
385,717 - +1.0
385,717 - +0.5
385,818 - +2.7
385,888 + -2.2
385,888 + +0.8
385,895 + -2.1
385,896 - -1.6
385,896 - -0.0
386,033 + +0.9
386,078 + -2.2
386,078 + -0.6
386,079 - +0.6
386,079 - -0.3
386,187 - Xcc-8004.399.1 0.22 +0.2
386,235 + Xcc-8004.399.1 0.27 -1.4
386,235 - Xcc-8004.399.1 0.27 -0.4

Or see this region's nucleotide sequence