Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.392.1 and Xcc-8004.393.1 are separated by 52 nucleotides Xcc-8004.393.1 and Xcc-8004.394.1 are separated by 356 nucleotides Xcc-8004.394.1 and Xcc-8004.395.1 are separated by 200 nucleotides
Xcc-8004.392.1: Xcc-8004.392.1 - FMN oxidoreductase, at 377,426 to 378,535
Xcc-8004.392.1
Xcc-8004.393.1: Xcc-8004.393.1 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 378,588 to 379,463
Xcc-8004.393.1
Xcc-8004.394.1: Xcc-8004.394.1 - FIG01211006: hypothetical protein, at 379,820 to 380,212
Xcc-8004.394.1
Xcc-8004.395.1: Xcc-8004.395.1 - Formyltetrahydrofolate deformylase (EC 3.5.1.10), at 380,413 to 381,282
Xcc-8004.395.1
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 377.632 kb on + strand, within Xcc-8004.392.1 at 377.633 kb on - strand, within Xcc-8004.392.1 at 377.633 kb on - strand, within Xcc-8004.392.1 at 377.633 kb on - strand, within Xcc-8004.392.1 at 377.639 kb on + strand, within Xcc-8004.392.1 at 377.639 kb on + strand, within Xcc-8004.392.1 at 377.657 kb on + strand, within Xcc-8004.392.1 at 377.657 kb on + strand, within Xcc-8004.392.1 at 377.657 kb on + strand, within Xcc-8004.392.1 at 377.657 kb on + strand, within Xcc-8004.392.1 at 377.658 kb on - strand, within Xcc-8004.392.1 at 378.035 kb on + strand, within Xcc-8004.392.1 at 378.036 kb on - strand, within Xcc-8004.392.1 at 378.218 kb on + strand, within Xcc-8004.392.1 at 378.218 kb on + strand, within Xcc-8004.392.1 at 378.218 kb on + strand, within Xcc-8004.392.1 at 378.218 kb on + strand, within Xcc-8004.392.1 at 378.218 kb on + strand, within Xcc-8004.392.1 at 378.219 kb on - strand, within Xcc-8004.392.1 at 378.219 kb on - strand, within Xcc-8004.392.1 at 378.219 kb on - strand, within Xcc-8004.392.1 at 378.219 kb on - strand, within Xcc-8004.392.1 at 378.219 kb on - strand, within Xcc-8004.392.1 at 378.219 kb on - strand, within Xcc-8004.392.1 at 378.279 kb on - strand, within Xcc-8004.392.1 at 378.279 kb on - strand, within Xcc-8004.392.1 at 378.285 kb on + strand, within Xcc-8004.392.1 at 378.422 kb on + strand, within Xcc-8004.392.1 at 378.423 kb on - strand, within Xcc-8004.392.1 at 378.488 kb on + strand at 378.489 kb on - strand at 378.595 kb on + strand at 378.670 kb on + strand at 378.924 kb on + strand, within Xcc-8004.393.1 at 378.924 kb on + strand, within Xcc-8004.393.1 at 378.924 kb on + strand, within Xcc-8004.393.1 at 378.925 kb on - strand, within Xcc-8004.393.1 at 378.925 kb on - strand, within Xcc-8004.393.1 at 378.925 kb on - strand, within Xcc-8004.393.1 at 379.189 kb on + strand, within Xcc-8004.393.1 at 379.228 kb on - strand, within Xcc-8004.393.1 at 379.263 kb on + strand, within Xcc-8004.393.1 at 379.264 kb on - strand, within Xcc-8004.393.1 at 379.461 kb on + strand at 379.461 kb on + strand at 379.461 kb on + strand at 379.461 kb on + strand at 379.550 kb on + strand at 379.551 kb on - strand at 379.551 kb on - strand at 379.715 kb on + strand at 379.716 kb on - strand at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.935 kb on + strand, within Xcc-8004.394.1 at 379.936 kb on - strand, within Xcc-8004.394.1 at 379.945 kb on + strand, within Xcc-8004.394.1 at 379.946 kb on - strand, within Xcc-8004.394.1 at 380.371 kb on + strand at 380.443 kb on + strand at 380.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 377,632 + Xcc-8004.392.1 0.19 -2.2 377,633 - Xcc-8004.392.1 0.19 -0.6 377,633 - Xcc-8004.392.1 0.19 +1.7 377,633 - Xcc-8004.392.1 0.19 +1.1 377,639 + Xcc-8004.392.1 0.19 +0.8 377,639 + Xcc-8004.392.1 0.19 +0.1 377,657 + Xcc-8004.392.1 0.21 -2.2 377,657 + Xcc-8004.392.1 0.21 -0.6 377,657 + Xcc-8004.392.1 0.21 +0.5 377,657 + Xcc-8004.392.1 0.21 -2.0 377,658 - Xcc-8004.392.1 0.21 -0.4 378,035 + Xcc-8004.392.1 0.55 +1.7 378,036 - Xcc-8004.392.1 0.55 +0.3 378,218 + Xcc-8004.392.1 0.71 +1.6 378,218 + Xcc-8004.392.1 0.71 +0.2 378,218 + Xcc-8004.392.1 0.71 -0.6 378,218 + Xcc-8004.392.1 0.71 -0.9 378,218 + Xcc-8004.392.1 0.71 +0.7 378,219 - Xcc-8004.392.1 0.71 +1.7 378,219 - Xcc-8004.392.1 0.71 +0.0 378,219 - Xcc-8004.392.1 0.71 +0.5 378,219 - Xcc-8004.392.1 0.71 -0.9 378,219 - Xcc-8004.392.1 0.71 +0.8 378,219 - Xcc-8004.392.1 0.71 -3.2 378,279 - Xcc-8004.392.1 0.77 -0.2 378,279 - Xcc-8004.392.1 0.77 +1.2 378,285 + Xcc-8004.392.1 0.77 +1.1 378,422 + Xcc-8004.392.1 0.90 +0.6 378,423 - Xcc-8004.392.1 0.90 -0.3 378,488 + -3.1 378,489 - +0.2 378,595 + +3.0 378,670 + +0.6 378,924 + Xcc-8004.393.1 0.38 +0.2 378,924 + Xcc-8004.393.1 0.38 +0.6 378,924 + Xcc-8004.393.1 0.38 +0.9 378,925 - Xcc-8004.393.1 0.38 +2.0 378,925 - Xcc-8004.393.1 0.38 +1.8 378,925 - Xcc-8004.393.1 0.38 +0.6 379,189 + Xcc-8004.393.1 0.69 +0.4 379,228 - Xcc-8004.393.1 0.73 +0.6 379,263 + Xcc-8004.393.1 0.77 -1.8 379,264 - Xcc-8004.393.1 0.77 -2.4 379,461 + -1.3 379,461 + -3.7 379,461 + -2.2 379,461 + -2.5 379,550 + +1.9 379,551 - +0.8 379,551 - -0.2 379,715 + +0.3 379,716 - +1.0 379,935 + Xcc-8004.394.1 0.29 +0.3 379,935 + Xcc-8004.394.1 0.29 +0.3 379,935 + Xcc-8004.394.1 0.29 -3.7 379,936 - Xcc-8004.394.1 0.30 +1.8 379,945 + Xcc-8004.394.1 0.32 -1.5 379,946 - Xcc-8004.394.1 0.32 +0.1 380,371 + +0.2 380,443 + +1.4 380,444 - +1.4
Or see this region's nucleotide sequence