Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3875.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3872.1 and Xcc-8004.3873.1 are separated by 14 nucleotidesXcc-8004.3873.1 and Xcc-8004.3875.1 are separated by 527 nucleotidesXcc-8004.3875.1 and Xcc-8004.3876.1 are separated by 16 nucleotides Xcc-8004.3872.1: Xcc-8004.3872.1 - FIG01212528: hypothetical protein, at 3,740,735 to 3,742,666 Xcc-8004.3872.1 Xcc-8004.3873.1: Xcc-8004.3873.1 - FIG01212144: hypothetical protein, at 3,742,681 to 3,742,827 Xcc-8004.3873.1 Xcc-8004.3875.1: Xcc-8004.3875.1 - FIG01212144: hypothetical protein, at 3,743,355 to 3,743,756 Xcc-8004.3875.1 Xcc-8004.3876.1: Xcc-8004.3876.1 - MFS transporter, at 3,743,773 to 3,745,026 Xcc-8004.3876.1 Position (kb) 3743 3744Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3742.428 kb on + strand, within Xcc-8004.3872.1at 3742.429 kb on - strand, within Xcc-8004.3872.1at 3742.744 kb on + strand, within Xcc-8004.3873.1at 3742.744 kb on + strand, within Xcc-8004.3873.1at 3742.744 kb on + strand, within Xcc-8004.3873.1at 3742.745 kb on - strand, within Xcc-8004.3873.1at 3742.775 kb on + strand, within Xcc-8004.3873.1at 3742.776 kb on - strand, within Xcc-8004.3873.1at 3742.838 kb on - strandat 3742.838 kb on - strandat 3743.071 kb on + strandat 3743.072 kb on - strandat 3743.198 kb on + strandat 3743.199 kb on - strandat 3743.199 kb on - strandat 3743.248 kb on - strandat 3743.306 kb on + strandat 3743.306 kb on + strandat 3743.307 kb on - strandat 3743.467 kb on + strand, within Xcc-8004.3875.1at 3743.468 kb on - strand, within Xcc-8004.3875.1at 3743.863 kb on + strandat 3743.863 kb on + strandat 3743.863 kb on + strandat 3743.863 kb on + strandat 3743.956 kb on - strand, within Xcc-8004.3876.1at 3744.014 kb on + strand, within Xcc-8004.3876.1at 3744.014 kb on + strand, within Xcc-8004.3876.1at 3744.014 kb on + strand, within Xcc-8004.3876.1at 3744.014 kb on + strand, within Xcc-8004.3876.1at 3744.014 kb on + strand, within Xcc-8004.3876.1at 3744.015 kb on - strand, within Xcc-8004.3876.1at 3744.015 kb on - strand, within Xcc-8004.3876.1at 3744.015 kb on - strand, within Xcc-8004.3876.1at 3744.015 kb on - strand, within Xcc-8004.3876.1at 3744.015 kb on - strand, within Xcc-8004.3876.1at 3744.126 kb on + strand, within Xcc-8004.3876.1at 3744.126 kb on + strand, within Xcc-8004.3876.1at 3744.126 kb on + strand, within Xcc-8004.3876.1at 3744.126 kb on + strand, within Xcc-8004.3876.1at 3744.126 kb on + strand, within Xcc-8004.3876.1at 3744.126 kb on + strand, within Xcc-8004.3876.1at 3744.126 kb on + strand, within Xcc-8004.3876.1at 3744.127 kb on - strand, within Xcc-8004.3876.1at 3744.127 kb on - strand, within Xcc-8004.3876.1at 3744.127 kb on - strand, within Xcc-8004.3876.1at 3744.127 kb on - strand, within Xcc-8004.3876.1at 3744.127 kb on - strand, within Xcc-8004.3876.1at 3744.128 kb on + strand, within Xcc-8004.3876.1at 3744.129 kb on - strand, within Xcc-8004.3876.1at 3744.129 kb on - strand, within Xcc-8004.3876.1at 3744.162 kb on - strand, within Xcc-8004.3876.1at 3744.329 kb on + strand, within Xcc-8004.3876.1at 3744.330 kb on - strand, within Xcc-8004.3876.1at 3744.330 kb on - strand, within Xcc-8004.3876.1at 3744.330 kb on - strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.407 kb on + strand, within Xcc-8004.3876.1at 3744.408 kb on - strand, within Xcc-8004.3876.1at 3744.408 kb on - strand, within Xcc-8004.3876.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,742,428 + Xcc-8004.3872.1 0.88 -0.7
3,742,429 - Xcc-8004.3872.1 0.88 -0.5
3,742,744 + Xcc-8004.3873.1 0.43 -0.0
3,742,744 + Xcc-8004.3873.1 0.43 -1.1
3,742,744 + Xcc-8004.3873.1 0.43 +0.6
3,742,745 - Xcc-8004.3873.1 0.44 +0.2
3,742,775 + Xcc-8004.3873.1 0.64 +0.3
3,742,776 - Xcc-8004.3873.1 0.65 -0.4
3,742,838 - +0.8
3,742,838 - +1.3
3,743,071 + -2.4
3,743,072 - -0.4
3,743,198 + +1.3
3,743,199 - -0.0
3,743,199 - -0.9
3,743,248 - +0.9
3,743,306 + +0.1
3,743,306 + -0.6
3,743,307 - +1.0
3,743,467 + Xcc-8004.3875.1 0.28 +1.6
3,743,468 - Xcc-8004.3875.1 0.28 -1.4
3,743,863 + -0.7
3,743,863 + -2.4
3,743,863 + -2.7
3,743,863 + -1.4
3,743,956 - Xcc-8004.3876.1 0.15 +0.6
3,744,014 + Xcc-8004.3876.1 0.19 +0.2
3,744,014 + Xcc-8004.3876.1 0.19 -0.2
3,744,014 + Xcc-8004.3876.1 0.19 -1.4
3,744,014 + Xcc-8004.3876.1 0.19 -1.3
3,744,014 + Xcc-8004.3876.1 0.19 +1.0
3,744,015 - Xcc-8004.3876.1 0.19 -0.5
3,744,015 - Xcc-8004.3876.1 0.19 +0.2
3,744,015 - Xcc-8004.3876.1 0.19 -1.1
3,744,015 - Xcc-8004.3876.1 0.19 -1.6
3,744,015 - Xcc-8004.3876.1 0.19 -1.2
3,744,126 + Xcc-8004.3876.1 0.28 +0.6
3,744,126 + Xcc-8004.3876.1 0.28 +3.1
3,744,126 + Xcc-8004.3876.1 0.28 +0.2
3,744,126 + Xcc-8004.3876.1 0.28 -1.9
3,744,126 + Xcc-8004.3876.1 0.28 -1.1
3,744,126 + Xcc-8004.3876.1 0.28 -0.1
3,744,126 + Xcc-8004.3876.1 0.28 -0.5
3,744,127 - Xcc-8004.3876.1 0.28 +0.8
3,744,127 - Xcc-8004.3876.1 0.28 +0.1
3,744,127 - Xcc-8004.3876.1 0.28 -2.3
3,744,127 - Xcc-8004.3876.1 0.28 -2.3
3,744,127 - Xcc-8004.3876.1 0.28 -0.9
3,744,128 + Xcc-8004.3876.1 0.28 +0.2
3,744,129 - Xcc-8004.3876.1 0.28 +0.9
3,744,129 - Xcc-8004.3876.1 0.28 -0.3
3,744,162 - Xcc-8004.3876.1 0.31 -1.2
3,744,329 + Xcc-8004.3876.1 0.44 +0.2
3,744,330 - Xcc-8004.3876.1 0.44 -0.0
3,744,330 - Xcc-8004.3876.1 0.44 +0.6
3,744,330 - Xcc-8004.3876.1 0.44 +1.4
3,744,407 + Xcc-8004.3876.1 0.51 -1.6
3,744,407 + Xcc-8004.3876.1 0.51 -0.4
3,744,407 + Xcc-8004.3876.1 0.51 -1.6
3,744,407 + Xcc-8004.3876.1 0.51 -0.9
3,744,407 + Xcc-8004.3876.1 0.51 -2.7
3,744,407 + Xcc-8004.3876.1 0.51 -2.9
3,744,407 + Xcc-8004.3876.1 0.51 +0.9
3,744,407 + Xcc-8004.3876.1 0.51 -3.2
3,744,407 + Xcc-8004.3876.1 0.51 +1.0
3,744,408 - Xcc-8004.3876.1 0.51 +0.5
3,744,408 - Xcc-8004.3876.1 0.51 +0.1

Or see this region's nucleotide sequence