Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3857.1 and Xcc-8004.3858.1 are separated by 7 nucleotides Xcc-8004.3858.1 and Xcc-8004.3859.1 are separated by 8 nucleotides Xcc-8004.3859.1 and Xcc-8004.3860.1 overlap by 1 nucleotides Xcc-8004.3860.1 and Xcc-8004.3861.1 are separated by 156 nucleotides Xcc-8004.3861.1 and Xcc-8004.3862.1 are separated by 12 nucleotides
Xcc-8004.3857.1: Xcc-8004.3857.1 - hypothetical protein, at 3,726,712 to 3,726,855
Xcc-8004.3857.1
Xcc-8004.3858.1: Xcc-8004.3858.1 - hypothetical protein, at 3,726,863 to 3,727,006
Xcc-8004.3858.1
Xcc-8004.3859.1: Xcc-8004.3859.1 - Two-component system regulatory protein, at 3,727,015 to 3,727,656
Xcc-8004.3859.1
Xcc-8004.3860.1: Xcc-8004.3860.1 - two-component system sensor protein, at 3,727,656 to 3,728,849
Xcc-8004.3860.1
Xcc-8004.3861.1: Xcc-8004.3861.1 - FIG01210504: hypothetical protein, at 3,729,006 to 3,729,602
Xcc-8004.3861.1
Xcc-8004.3862.1: Xcc-8004.3862.1 - Septum site-determining protein MinC, at 3,729,615 to 3,730,355
Xcc-8004.3862.1
Position (kb) 3727
3728
3729 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 3727.151 kb on + strand, within Xcc-8004.3859.1 at 3727.355 kb on + strand, within Xcc-8004.3859.1 at 3727.356 kb on - strand, within Xcc-8004.3859.1 at 3727.356 kb on - strand, within Xcc-8004.3859.1 at 3727.356 kb on - strand, within Xcc-8004.3859.1 at 3727.618 kb on + strand at 3727.673 kb on + strand at 3727.674 kb on - strand at 3727.768 kb on + strand at 3727.768 kb on + strand at 3727.768 kb on + strand at 3727.768 kb on + strand at 3727.768 kb on + strand at 3727.769 kb on - strand at 3728.008 kb on - strand, within Xcc-8004.3860.1 at 3728.044 kb on - strand, within Xcc-8004.3860.1 at 3728.044 kb on - strand, within Xcc-8004.3860.1 at 3728.142 kb on + strand, within Xcc-8004.3860.1 at 3728.142 kb on + strand, within Xcc-8004.3860.1 at 3728.142 kb on + strand, within Xcc-8004.3860.1 at 3728.143 kb on - strand, within Xcc-8004.3860.1 at 3728.143 kb on - strand, within Xcc-8004.3860.1 at 3728.143 kb on - strand, within Xcc-8004.3860.1 at 3728.143 kb on - strand, within Xcc-8004.3860.1 at 3728.143 kb on - strand, within Xcc-8004.3860.1 at 3728.143 kb on - strand, within Xcc-8004.3860.1 at 3728.143 kb on - strand, within Xcc-8004.3860.1 at 3728.395 kb on + strand, within Xcc-8004.3860.1 at 3728.446 kb on + strand, within Xcc-8004.3860.1 at 3728.512 kb on - strand, within Xcc-8004.3860.1 at 3728.512 kb on - strand, within Xcc-8004.3860.1 at 3728.578 kb on + strand, within Xcc-8004.3860.1 at 3728.578 kb on + strand, within Xcc-8004.3860.1 at 3728.578 kb on + strand, within Xcc-8004.3860.1 at 3728.578 kb on + strand, within Xcc-8004.3860.1 at 3728.578 kb on + strand, within Xcc-8004.3860.1 at 3728.578 kb on + strand, within Xcc-8004.3860.1 at 3728.579 kb on - strand, within Xcc-8004.3860.1 at 3728.579 kb on - strand, within Xcc-8004.3860.1 at 3728.630 kb on - strand, within Xcc-8004.3860.1 at 3728.677 kb on + strand, within Xcc-8004.3860.1 at 3728.677 kb on + strand, within Xcc-8004.3860.1 at 3728.677 kb on + strand, within Xcc-8004.3860.1 at 3728.677 kb on + strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.678 kb on - strand, within Xcc-8004.3860.1 at 3728.764 kb on + strand at 3728.764 kb on + strand at 3728.764 kb on + strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.765 kb on - strand at 3728.770 kb on + strand at 3728.770 kb on + strand at 3728.770 kb on + strand at 3728.771 kb on - strand at 3728.771 kb on - strand at 3728.771 kb on - strand at 3728.771 kb on - strand at 3728.771 kb on - strand at 3728.771 kb on - strand at 3728.771 kb on - strand at 3728.831 kb on + strand at 3728.831 kb on + strand at 3728.832 kb on - strand at 3728.832 kb on - strand at 3728.863 kb on + strand at 3728.863 kb on + strand at 3728.864 kb on - strand at 3728.864 kb on - strand at 3728.870 kb on - strand at 3728.950 kb on + strand at 3728.950 kb on + strand at 3728.950 kb on + strand at 3728.951 kb on - strand at 3728.951 kb on - strand at 3728.951 kb on - strand at 3728.951 kb on - strand at 3728.951 kb on - strand at 3728.951 kb on - strand at 3728.953 kb on + strand at 3729.135 kb on + strand, within Xcc-8004.3861.1 at 3729.255 kb on + strand, within Xcc-8004.3861.1 at 3729.255 kb on + strand, within Xcc-8004.3861.1 at 3729.255 kb on + strand, within Xcc-8004.3861.1 at 3729.255 kb on + strand, within Xcc-8004.3861.1 at 3729.255 kb on + strand, within Xcc-8004.3861.1 at 3729.256 kb on - strand, within Xcc-8004.3861.1 at 3729.256 kb on - strand, within Xcc-8004.3861.1 at 3729.315 kb on + strand, within Xcc-8004.3861.1 at 3729.315 kb on + strand, within Xcc-8004.3861.1 at 3729.333 kb on + strand, within Xcc-8004.3861.1 at 3729.334 kb on - strand, within Xcc-8004.3861.1 at 3729.498 kb on + strand, within Xcc-8004.3861.1 at 3729.519 kb on + strand, within Xcc-8004.3861.1 at 3729.519 kb on + strand, within Xcc-8004.3861.1 at 3729.519 kb on + strand, within Xcc-8004.3861.1 at 3729.519 kb on + strand, within Xcc-8004.3861.1 at 3729.519 kb on + strand, within Xcc-8004.3861.1 at 3729.519 kb on + strand, within Xcc-8004.3861.1 at 3729.519 kb on + strand, within Xcc-8004.3861.1 at 3729.520 kb on - strand, within Xcc-8004.3861.1 at 3729.520 kb on - strand, within Xcc-8004.3861.1 at 3729.520 kb on - strand, within Xcc-8004.3861.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 3,727,151 + Xcc-8004.3859.1 0.21 -0.2 3,727,355 + Xcc-8004.3859.1 0.53 -0.1 3,727,356 - Xcc-8004.3859.1 0.53 +1.6 3,727,356 - Xcc-8004.3859.1 0.53 +2.0 3,727,356 - Xcc-8004.3859.1 0.53 -0.7 3,727,618 + +0.4 3,727,673 + +0.1 3,727,674 - -0.3 3,727,768 + +1.0 3,727,768 + -0.2 3,727,768 + +1.1 3,727,768 + +3.3 3,727,768 + +1.0 3,727,769 - +2.6 3,728,008 - Xcc-8004.3860.1 0.29 +0.4 3,728,044 - Xcc-8004.3860.1 0.32 +0.7 3,728,044 - Xcc-8004.3860.1 0.32 +0.9 3,728,142 + Xcc-8004.3860.1 0.41 -0.7 3,728,142 + Xcc-8004.3860.1 0.41 +0.4 3,728,142 + Xcc-8004.3860.1 0.41 +1.6 3,728,143 - Xcc-8004.3860.1 0.41 +0.8 3,728,143 - Xcc-8004.3860.1 0.41 -0.2 3,728,143 - Xcc-8004.3860.1 0.41 +0.9 3,728,143 - Xcc-8004.3860.1 0.41 +0.1 3,728,143 - Xcc-8004.3860.1 0.41 +2.0 3,728,143 - Xcc-8004.3860.1 0.41 +0.7 3,728,143 - Xcc-8004.3860.1 0.41 -1.7 3,728,395 + Xcc-8004.3860.1 0.62 -0.1 3,728,446 + Xcc-8004.3860.1 0.66 +1.7 3,728,512 - Xcc-8004.3860.1 0.72 -0.0 3,728,512 - Xcc-8004.3860.1 0.72 +1.2 3,728,578 + Xcc-8004.3860.1 0.77 +0.9 3,728,578 + Xcc-8004.3860.1 0.77 -0.2 3,728,578 + Xcc-8004.3860.1 0.77 -1.8 3,728,578 + Xcc-8004.3860.1 0.77 +2.8 3,728,578 + Xcc-8004.3860.1 0.77 +3.0 3,728,578 + Xcc-8004.3860.1 0.77 -0.2 3,728,579 - Xcc-8004.3860.1 0.77 +0.3 3,728,579 - Xcc-8004.3860.1 0.77 -0.2 3,728,630 - Xcc-8004.3860.1 0.82 -0.0 3,728,677 + Xcc-8004.3860.1 0.86 +2.3 3,728,677 + Xcc-8004.3860.1 0.86 -0.2 3,728,677 + Xcc-8004.3860.1 0.86 +0.0 3,728,677 + Xcc-8004.3860.1 0.86 +2.0 3,728,678 - Xcc-8004.3860.1 0.86 -0.5 3,728,678 - Xcc-8004.3860.1 0.86 +0.8 3,728,678 - Xcc-8004.3860.1 0.86 -0.8 3,728,678 - Xcc-8004.3860.1 0.86 +0.9 3,728,678 - Xcc-8004.3860.1 0.86 +1.0 3,728,678 - Xcc-8004.3860.1 0.86 +1.6 3,728,678 - Xcc-8004.3860.1 0.86 +0.7 3,728,678 - Xcc-8004.3860.1 0.86 +1.0 3,728,678 - Xcc-8004.3860.1 0.86 -0.9 3,728,764 + +0.2 3,728,764 + -0.2 3,728,764 + +1.6 3,728,765 - +2.5 3,728,765 - +1.3 3,728,765 - +2.1 3,728,765 - -1.1 3,728,765 - +0.6 3,728,765 - +2.3 3,728,765 - -0.6 3,728,765 - +1.0 3,728,765 - +0.2 3,728,765 - +0.7 3,728,770 + -0.8 3,728,770 + -0.0 3,728,770 + -1.0 3,728,771 - +1.7 3,728,771 - +0.8 3,728,771 - +1.6 3,728,771 - -0.4 3,728,771 - -1.3 3,728,771 - +2.3 3,728,771 - +1.0 3,728,831 + -0.4 3,728,831 + -0.4 3,728,832 - -1.1 3,728,832 - -0.1 3,728,863 + -0.7 3,728,863 + -2.3 3,728,864 - +0.5 3,728,864 - +2.1 3,728,870 - +0.2 3,728,950 + -0.6 3,728,950 + -0.1 3,728,950 + +0.9 3,728,951 - +4.2 3,728,951 - +4.9 3,728,951 - +2.0 3,728,951 - +7.4 3,728,951 - +5.5 3,728,951 - +5.6 3,728,953 + +1.0 3,729,135 + Xcc-8004.3861.1 0.22 +4.6 3,729,255 + Xcc-8004.3861.1 0.42 +4.6 3,729,255 + Xcc-8004.3861.1 0.42 +1.3 3,729,255 + Xcc-8004.3861.1 0.42 +3.0 3,729,255 + Xcc-8004.3861.1 0.42 +4.4 3,729,255 + Xcc-8004.3861.1 0.42 +1.5 3,729,256 - Xcc-8004.3861.1 0.42 -1.0 3,729,256 - Xcc-8004.3861.1 0.42 -1.4 3,729,315 + Xcc-8004.3861.1 0.52 +3.9 3,729,315 + Xcc-8004.3861.1 0.52 +3.4 3,729,333 + Xcc-8004.3861.1 0.55 +2.6 3,729,334 - Xcc-8004.3861.1 0.55 +3.1 3,729,498 + Xcc-8004.3861.1 0.82 +0.3 3,729,519 + Xcc-8004.3861.1 0.86 +2.7 3,729,519 + Xcc-8004.3861.1 0.86 +2.0 3,729,519 + Xcc-8004.3861.1 0.86 +3.2 3,729,519 + Xcc-8004.3861.1 0.86 +2.4 3,729,519 + Xcc-8004.3861.1 0.86 +4.3 3,729,519 + Xcc-8004.3861.1 0.86 +2.6 3,729,519 + Xcc-8004.3861.1 0.86 +3.2 3,729,520 - Xcc-8004.3861.1 0.86 +0.2 3,729,520 - Xcc-8004.3861.1 0.86 +5.7 3,729,520 - Xcc-8004.3861.1 0.86 +6.4
Or see this region's nucleotide sequence