Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3795.1 and Xcc-8004.3796.1 overlap by 14 nucleotides Xcc-8004.3796.1 and Xcc-8004.3797.1 overlap by 4 nucleotides
Xcc-8004.3795.1: Xcc-8004.3795.1 - Histidine kinase/response regulator hybrid protein, at 3,670,505 to 3,672,445
Xcc-8004.3795.1
Xcc-8004.3796.1: Xcc-8004.3796.1 - Putative SigmaB asociated two-component system sensor protein, at 3,672,432 to 3,673,310
Xcc-8004.3796.1
Xcc-8004.3797.1: Xcc-8004.3797.1 - hypothetical protein, at 3,673,307 to 3,674,317
Xcc-8004.3797.1
Xcc-8004.3798.1: Xcc-8004.3798.1 - Anti-sigma B factor RsbT, at 3,674,308 to 3,674,709
Xcc-8004.3798.1
Position (kb) 3672
3673
3674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3672.126 kb on + strand, within Xcc-8004.3795.1 at 3672.127 kb on - strand, within Xcc-8004.3795.1 at 3672.413 kb on + strand at 3672.433 kb on + strand at 3672.434 kb on - strand at 3672.434 kb on - strand at 3672.434 kb on - strand at 3672.477 kb on + strand at 3672.478 kb on - strand at 3672.802 kb on + strand, within Xcc-8004.3796.1 at 3673.120 kb on + strand, within Xcc-8004.3796.1 at 3673.120 kb on + strand, within Xcc-8004.3796.1 at 3673.121 kb on - strand, within Xcc-8004.3796.1 at 3673.189 kb on + strand, within Xcc-8004.3796.1 at 3673.190 kb on - strand, within Xcc-8004.3796.1 at 3673.882 kb on - strand, within Xcc-8004.3797.1 at 3673.953 kb on + strand, within Xcc-8004.3797.1 at 3673.953 kb on + strand, within Xcc-8004.3797.1 at 3673.954 kb on - strand, within Xcc-8004.3797.1 at 3673.954 kb on - strand, within Xcc-8004.3797.1 at 3674.022 kb on + strand, within Xcc-8004.3797.1 at 3674.023 kb on - strand, within Xcc-8004.3797.1 at 3674.023 kb on - strand, within Xcc-8004.3797.1 at 3674.023 kb on - strand, within Xcc-8004.3797.1 at 3674.023 kb on - strand, within Xcc-8004.3797.1 at 3674.023 kb on - strand, within Xcc-8004.3797.1 at 3674.023 kb on - strand, within Xcc-8004.3797.1 at 3674.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 3,672,126 + Xcc-8004.3795.1 0.84 +0.5 3,672,127 - Xcc-8004.3795.1 0.84 +0.2 3,672,413 + +0.1 3,672,433 + +1.9 3,672,434 - +1.1 3,672,434 - +0.6 3,672,434 - -2.2 3,672,477 + -0.4 3,672,478 - +1.7 3,672,802 + Xcc-8004.3796.1 0.42 -3.1 3,673,120 + Xcc-8004.3796.1 0.78 +1.2 3,673,120 + Xcc-8004.3796.1 0.78 +4.0 3,673,121 - Xcc-8004.3796.1 0.78 +1.5 3,673,189 + Xcc-8004.3796.1 0.86 +1.7 3,673,190 - Xcc-8004.3796.1 0.86 +1.8 3,673,882 - Xcc-8004.3797.1 0.57 -0.0 3,673,953 + Xcc-8004.3797.1 0.64 +1.6 3,673,953 + Xcc-8004.3797.1 0.64 -0.1 3,673,954 - Xcc-8004.3797.1 0.64 +0.2 3,673,954 - Xcc-8004.3797.1 0.64 -1.6 3,674,022 + Xcc-8004.3797.1 0.71 +0.1 3,674,023 - Xcc-8004.3797.1 0.71 -0.4 3,674,023 - Xcc-8004.3797.1 0.71 -3.0 3,674,023 - Xcc-8004.3797.1 0.71 +3.6 3,674,023 - Xcc-8004.3797.1 0.71 -1.0 3,674,023 - Xcc-8004.3797.1 0.71 -1.5 3,674,023 - Xcc-8004.3797.1 0.71 -1.9 3,674,273 + -0.1
Or see this region's nucleotide sequence